RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 NAPEPLDQ6IQ20 393 aa17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 PARS2Q7L3T8 475 aaKnown RBP17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 MAATS1Q7Z4T9 603 aa17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 TRIM69Q86WT6 500 aa17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 PDCD6IPQ8WUM4 868 aaKnown RBP17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 ASB12Q8WXK4 309 aa17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 ZNF592Q92610 1267 aa17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 ARRDC3Q96B67 414 aa17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 SCRN2Q96FV2 425 aa17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 FAM118BQ9BPY3 351 aa17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 AP1M1Q9BXS5 423 aa17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 LRRC40Q9H9A6 602 aa17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 POLR3BQ9NW08 1133 aaPredicted RBP17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 HACD3Q9P035 362 aa17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 PCDHGC4Q9Y5F7 938 aa17.64■□□□□ 0.41
CLSTN3-210ENST00000540931 DMXL1Q9Y485 3027 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 TBC1D3DA0A087WVF3 549 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 TBC1D3IA0A087WXS9 549 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 TBC1D3EA0A087X179 549 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 TBC1D3KA0A087X1G2 549 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 TBC1D3FA6NER0 549 aaPredicted RBP17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 TBC1D3LB9A6J9 549 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 E7EVH7 732 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 SMAPO00193 183 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 PSMD11O00231 422 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 ZNF500O60304 480 aaPredicted RBP17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 FZD6O60353 706 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 PIGNO95427 931 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 NDST3O95803 873 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 LMNAP02545 664 aaKnown RBP17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 TBC1D3HP0C7X1 549 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 CD68P34810 354 aaPredicted RBP17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 ADPRHP54922 357 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 NIPAL4Q0D2K0 466 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 LAMB3Q13751 1172 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 SIM2Q14190 667 aaPredicted RBP17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 ARMC3Q5W041 872 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 TBC1D3GQ6DHY5 549 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 TBC1D3CQ6IPX1 549 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 ZNF572Q7Z3I7 529 aaPredicted RBP17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 PRPF39Q86UA1 669 aaKnown RBP17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 KLHDC8BQ8IXV7 354 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 TBC1D3Q8IZP1 549 aaPredicted RBP17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 CCDC110Q8TBZ0 833 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 RMDN1Q96DB5 314 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 ZNF419Q96HQ0 510 aaPredicted RBP17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 RBM15Q96T37 977 aaKnown RBP eCLIP17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 SLC6A17Q9H1V8 727 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 EPC1Q9H2F5 836 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 TRABDQ9H4I3 376 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 RAD18Q9NS91 495 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 SUSD2Q9UGT4 822 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 DMTF1Q9Y222 760 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 CEP250Q9BV73 2442 aa17.63■□□□□ 0.41
CLSTN3-210ENST00000540931 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 ANKRD66B4E2M5 251 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 AREL1O15033 823 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 FGF1P05230 155 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 TIMP2P16035 220 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 GKP32189 559 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 PDE1BQ01064 536 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 TRAF2Q12933 501 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 ARHGEF7Q14155 803 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 TMEM52BQ4KMG9 183 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 SETMARQ53H47 684 aaPredicted RBP17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 PCGF5Q86SE9 256 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 CACUL1Q86Y37 369 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 CXorf40AQ8TE69 158 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 LRRN4Q8WUT4 740 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 SKA1Q96BD8 255 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 LYSMD1Q96S90 227 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 C19orf43Q9BQ61 176 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 MLPHQ9BV36 600 aaPredicted RBP17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 CEP41Q9BYV8 373 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 CDH19Q9H159 772 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 EIF2B3Q9NR50 452 aaKnown RBP17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 FADS3Q9Y5Q0 445 aa17.62■□□□□ 0.41
CLSTN3-210ENST00000540931 NCOR2Q9Y618 2525 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 LOC285095A0A1B0GVY8 99 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 METTL12A8MUP2 240 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 PRR5-ARHGAP8B1AHC4 643 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 ESPNB1AK53 854 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 RIOK3O14730 519 aaKnown RBP17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 PCDH8O95206 1070 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 MMP2P08253 660 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 LMAN1P49257 510 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 WNT3AP56704 352 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 SGCGQ13326 291 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 PPP1R7Q15435 360 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 PMS2CLQ68D20 193 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 KIAA0895LQ68EN5 471 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 B4GALNT4Q76KP1 1039 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 DPPA4Q7L190 304 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 FAM124AQ86V42 546 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 HORMAD1Q86X24 394 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 CEP112Q8N8E3 955 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 SPATA4Q8NEY3 305 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 PIH1D2Q8WWB5 315 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 RLN3Q8WXF3 142 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 MCCC1Q96RQ3 725 aaPredicted RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms