RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	ARHGAP36	Q6ZRI8	547 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	VPS36	Q86VN1	386 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CBARP	Q8N350	705 aa	Predicted RBP	13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SDR16C5	Q8N3Y7	309 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SNIP1	Q8TAD8	396 aa	Known RBP	13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	WRAP53	Q9BUR4	548 aa	Known RBP	13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CLPB	Q9H078	707 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TCEAL2	Q9H3H9	227 aa	Predicted RBP	13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ATP13A3	Q9H7F0	1226 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ZWILCH	Q9H900	591 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	NENF	Q9UMX5	172 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ATP8A1	Q9Y2Q0	1164 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SYCE3	A1L190	88 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475		H3BRJ5	948 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	HTRA2	O43464	458 aa	Predicted RBP	13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TLX3	O43711	291 aa	Predicted RBP	13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	DXO	O77932	396 aa	Known RBP	13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	CYP1A2	P05177	515 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	RARA	P10276	462 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TCF4	P15884	667 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	GM2A	P17900	193 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	IL4R	P24394	825 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SERPINA4	P29622	427 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	HNRNPH3	P31942	346 aa	Known RBP	13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	LIG3	P49916	1009 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	RENBP	P51606	427 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	UBASH3A	P57075	661 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	AP1S1	P61966	158 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	POLR2L	P62875	67 aa	Known RBP	13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SLC25A11	Q02978	314 aa	Known RBP	13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SLC10A7	Q0GE19	358 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	C6orf132	Q5T0Z8	1188 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ERAP2	Q6P179	960 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	LVRN	Q6Q4G3	990 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	C19orf48	Q6RUI8	117 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	IGF2-AS	Q6U949	168 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PDZD3	Q86UT5	571 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	LUZP1	Q86V48	1076 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TP53INP2	Q8IXH6	220 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PHACTR4	Q8IZ21	702 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	IFI44	Q8TCB0	444 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	LMX1A	Q8TE12	382 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	GRAMD1A	Q96CP6	724 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	APOO	Q9BUR5	198 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	LRRC61	Q9BV99	259 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	CINP	Q9BW66	212 aa	Predicted RBP	13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SP110	Q9HB58	689 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	MYO1A	Q9UBC5	1043 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SEPT3	Q9UH03	358 aa		13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	APOBEC3B	Q9UH17	382 aa	Known RBP	13.2	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475		A0A087X0T9	212 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475		A0A1W2PQ67	120 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	YY2	O15391	372 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	MAFK	O60675	156 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	FAM228B	P0C875	321 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	MYF5	P13349	255 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	XPA	P23025	273 aa	Predicted RBP	13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TRIM23	P36406	574 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	HSPA9	P38646	679 aa	Known RBP	13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	BLK	P51451	505 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ARSE	P51690	589 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	HK3	P52790	923 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ADK	P55263	362 aa	Known RBP	13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TPM4	P67936	248 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PPARD	Q03181	441 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	BCL2L1	Q07817	233 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	MTM1	Q13496	603 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	INPP5A	Q14642	412 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	LBR	Q14739	615 aa	Known RBP	13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	NFATC4	Q14934	902 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PRRT3	Q5FWE3	981 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	RALGPS1	Q5JS13	557 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TXNRD3NB	Q6F5E7	133 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	LIPI	Q6XZB0	460 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	DPPA4	Q7L190	304 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	RBFA	Q8N0V3	343 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	FSTL5	Q8N475	847 aa	Predicted RBP	13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TPCN2	Q8NHX9	752 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	HNRNPLL	Q8WVV9	542 aa	Known RBP	13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	CSPG4P5	Q96PW8	444 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	DEPDC7	Q96QD5	511 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	IL12RB2	Q99665	862 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SLC13A1	Q9BZW2	595 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	THAP2	Q9H0W7	228 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ETNK2	Q9NVF9	386 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	RCOR3	Q9P2K3	495 aa	Predicted RBP	13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	IP6K2	Q9UHH9	426 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	COQ6	Q9Y2Z9	468 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	AK5	Q9Y6K8	562 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	DGKB	Q9Y6T7	804 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	MGA	Q8IWI9	3026 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	KIF26B	Q2KJY2	2108 aa		13.19	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ATM	Q13315	3056 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	DFFA	O00273	331 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	BRINP1	O60477	761 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SOCS5	O75159	536 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	GYPC	P04921	128 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TSHR	P16473	764 aa		13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 212.2 ms