RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.92□□□□□ -0.341e-6■□□□□ 8.4
SFSWAP-209ENST00000540469 SLC27A5Q9Y2P5 690 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 SNX5Q9Y5X3 404 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 CPQQ9Y646 472 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 THSD7AQ9UPZ6 1657 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 QSER1Q2KHR3 1735 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 PFDN6O15212 129 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 AP2A1O95782 977 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 PABPC1P11940 636 aaKnown RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 ATP5F1P24539 256 aaPredicted RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 OXTRP30559 389 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 GNL1P36915 607 aaPredicted RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 POU6F1Q14863 301 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 FAM117BQ6P1L5 589 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 CRTC3Q6UUV7 619 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 PDZD4Q76G19 769 aaPredicted RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 PIWIL3Q7Z3Z3 882 aaKnown RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 TMEM135Q86UB9 458 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 ZCCHC7Q8N3Z6 543 aaKnown RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 TRAPPC12Q8WVT3 735 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 ISL2Q96A47 359 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 UHRF1Q96T88 793 aaPredicted RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 LPIN3Q9BQK8 851 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 ADAMTS10Q9H324 1103 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 RIC8BQ9NVN3 520 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 TMEM181Q9P2C4 612 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 KIAA1257Q9ULG3 409 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 A0A0J9YYE9 177 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 IQCA1LA6NCM1 817 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 SYNCRIPO60506 623 aaKnown RBP12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 INHBBP09529 407 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 FCGR1AP12314 374 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 NCK1P16333 377 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 TMBIM6P55061 237 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 GHRHRQ02643 423 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 IMPG1Q17R60 797 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 KDELC2Q7Z4H8 507 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 NLGN1Q8N2Q7 840 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 PDZD7Q9H5P4 517 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 DOCK5Q9H7D0 1870 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 SPC25Q9HBM1 224 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 NSMCE4AQ9NXX6 385 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 SUN2Q9UH99 717 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 M0R3G1 203 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 ACKR2O00590 384 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 ZBTB24O43167 697 aaPredicted RBP12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 MAFO75444 373 aaPredicted RBP12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 SBK3P0C264 359 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 SERPINB1P30740 379 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 RBP5P82980 135 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 SOWAHAQ2M3V2 549 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 PIGZQ86VD9 579 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 KIAA2013Q8IYS2 634 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 CENPLQ8N0S6 344 aaPredicted RBP12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 PDPRQ8NCN5 879 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 ABHD11Q8NFV4 315 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 DNAJB14Q8TBM8 379 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 CAPSLQ8WWF8 208 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 SNX19Q92543 992 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 LRCH3Q96II8 777 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 SCHIP1Q9P0W5 487 aaPredicted RBP12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 CD300AQ9UGN4 299 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 AQP12BA6NM10 295 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 NME4O00746 187 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 NPHS1O60500 1241 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 PFKMP08237 780 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 ATICP31939 592 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 HLCSP50747 726 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 CLCN3P51790 818 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 LSM3P62310 102 aaKnown RBP12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 SMUG1Q53HV7 270 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 FAM219BQ5XKK7 198 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 ZNF773Q6PK81 442 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 SLC26A9Q7LBE3 791 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 BTLAQ7Z6A9 289 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 AQP12AQ8IXF9 295 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 RYBPQ8N488 228 aaPredicted RBP12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 ADAMTS16Q8TE57 1224 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 KIF12Q96FN5 646 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 RNF145Q96MT1 663 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 ZNF347Q96SE7 839 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 NIFKQ9BYG3 293 aaKnown RBP12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 CDHR5Q9HBB8 845 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 LRRC4Q9HBW1 653 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 AGPAT4Q9NRZ5 378 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 HACD3Q9P035 362 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 TCAF1Q9Y4C2 921 aa12.91□□□□□ -0.34
SFSWAP-209ENST00000540469 DEAF1O75398 565 aaPredicted RBP12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 RSL1D1O76021 490 aaKnown RBP12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 MYO1DO94832 1006 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 AHSGP02765 367 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 NFKB1P19838 968 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 IDUAP35475 653 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 HPCAL1P37235 193 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 GSSP48637 474 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 KCNJ8Q15842 424 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 INAQ16352 499 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 ZNF280DQ6N043 979 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 ADCK1Q86TW2 530 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 SLCO6A1Q86UG4 719 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms