RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ADAM28Q9UKQ2 775 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 CDYLQ9Y232 598 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 RAP2CQ9Y3L5 183 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 TLR5O60602 858 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 RAMP2O60895 175 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 RNASEH1O60930 286 aaKnown RBP17.01■□□□□ 0.31
USP28-208ENST00000540438 CYP11A1P05108 521 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 SKIP12755 728 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 PLIN5Q00G26 463 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 HECTD2Q5U5R9 776 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 NADSYN1Q6IA69 706 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 MON1AQ86VX9 555 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 OR6Y1Q8NGX8 325 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 SREK1Q8WXA9 508 aaKnown RBP17.01■□□□□ 0.31
USP28-208ENST00000540438 LRCH3Q96II8 777 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 GLT1D1Q96MS3 346 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 GALPQ9UBC7 116 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 FAM155AB1AL88 458 aaPredicted RBP17■□□□□ 0.31
USP28-208ENST00000540438 UBFD1O14562 309 aaKnown RBP17■□□□□ 0.31
USP28-208ENST00000540438 BNIP3LO60238 219 aa17■□□□□ 0.31
USP28-208ENST00000540438 FOXA1P55317 472 aa17■□□□□ 0.31
USP28-208ENST00000540438 HTRA3P83110 453 aa17■□□□□ 0.31
USP28-208ENST00000540438 NSUN2Q08J23 767 aaKnown RBP eCLIP17■□□□□ 0.31
USP28-208ENST00000540438 ART3Q13508 389 aa17■□□□□ 0.31
USP28-208ENST00000540438 CEACAM7Q14002 265 aa17■□□□□ 0.31
USP28-208ENST00000540438 KDELC1Q6UW63 502 aa17■□□□□ 0.31
USP28-208ENST00000540438 PAF1Q8N7H5 531 aa17■□□□□ 0.31
USP28-208ENST00000540438 KDM1BQ8NB78 822 aa17■□□□□ 0.31
USP28-208ENST00000540438 AUTS2Q8WXX7 1259 aa17■□□□□ 0.31
USP28-208ENST00000540438 IRGQQ8WZA9 623 aa17■□□□□ 0.31
USP28-208ENST00000540438 ZNF512Q96ME7 567 aaPredicted RBP17■□□□□ 0.31
USP28-208ENST00000540438 ABCG8Q9H221 673 aa17■□□□□ 0.31
USP28-208ENST00000540438 MRPL46Q9H2W6 279 aaKnown RBP17■□□□□ 0.31
USP28-208ENST00000540438 PIF1Q9H611 641 aa17■□□□□ 0.31
USP28-208ENST00000540438 YY1AP1Q9H869 796 aa17■□□□□ 0.31
USP28-208ENST00000540438 IGSF5Q9NSI5 407 aa17■□□□□ 0.31
USP28-208ENST00000540438 RRN3Q9NYV6 651 aa17■□□□□ 0.31
USP28-208ENST00000540438 A8MT66 165 aa17■□□□□ 0.31
USP28-208ENST00000540438 CBX4O00257 560 aa17■□□□□ 0.31
USP28-208ENST00000540438 CYLC2Q14093 348 aaPredicted RBP17■□□□□ 0.31
USP28-208ENST00000540438 PFKFB4Q16877 469 aa17■□□□□ 0.31
USP28-208ENST00000540438 AGKQ53H12 422 aa17■□□□□ 0.31
USP28-208ENST00000540438 PAOXQ6QHF9 649 aa17■□□□□ 0.31
USP28-208ENST00000540438 SLC24A5Q71RS6 500 aa17■□□□□ 0.31
USP28-208ENST00000540438 PTERQ96BW5 349 aa17■□□□□ 0.31
USP28-208ENST00000540438 IFT43Q96FT9 208 aa17■□□□□ 0.31
USP28-208ENST00000540438 C3orf30Q96M34 536 aa17■□□□□ 0.31
USP28-208ENST00000540438 MCMBPQ9BTE3 642 aa17■□□□□ 0.31
USP28-208ENST00000540438 MMADHCQ9H3L0 296 aaPredicted RBP17■□□□□ 0.31
USP28-208ENST00000540438 ENTPD7Q9NQZ7 604 aa17■□□□□ 0.31
USP28-208ENST00000540438 TLR9Q9NR96 1032 aa17■□□□□ 0.31
USP28-208ENST00000540438 TREX1Q9NSU2 369 aa17■□□□□ 0.31
USP28-208ENST00000540438 ANGPTL2Q9UKU9 493 aa17■□□□□ 0.31
USP28-208ENST00000540438 PCDHB5Q9Y5E4 795 aa17■□□□□ 0.31
USP28-208ENST00000540438 IQCF5A8MTL0 148 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 UBXN8O00124 270 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 GOT2P00505 430 aaKnown RBP16.99■□□□□ 0.31
USP28-208ENST00000540438 SLC10A3P09131 477 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 ETS2P15036 469 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 CHRM3P20309 590 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 DNAJB2P25686 324 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 FMO4P31512 558 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 SLC6A4P31645 630 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 CDK7P50613 346 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 CCNG1P51959 295 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 EIF4EBP2Q13542 120 aaPredicted RBP16.99■□□□□ 0.31
USP28-208ENST00000540438 ZNF235Q14590 738 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 BRMS1LQ5PSV4 323 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 THEMIS2Q5TEJ8 643 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 ACAD11Q709F0 780 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 SPATA24Q86W54 205 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 FBXW8Q8N3Y1 598 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 BHLHE22Q8NFJ8 381 aaPredicted RBP16.99■□□□□ 0.31
USP28-208ENST00000540438 BCL7CQ8WUZ0 217 aaPredicted RBP16.99■□□□□ 0.31
USP28-208ENST00000540438 ECSITQ9BQ95 431 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 RGS18Q9NS28 235 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 PLK2Q9NYY3 685 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 GOLGA4Q13439 2230 aaKnown RBP16.99■□□□□ 0.31
USP28-208ENST00000540438 CA12O43570 354 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 PEX1O43933 1283 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 BTKQ06187 659 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 NAB1Q13506 487 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 FAM83EQ2M2I3 478 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 MMEL1Q495T6 779 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 CCDC97Q96F63 343 aaPredicted RBP16.99■□□□□ 0.31
USP28-208ENST00000540438 TIMM22Q9Y584 194 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 KIAA0100Q14667 2235 aaKnown RBP16.99■□□□□ 0.31
USP28-208ENST00000540438 CCDC162PA2VCL2 907 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 TARM1B6A8C7 271 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 CABYRO75952 493 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 ITGB6P18564 788 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 SLC11A1P49279 550 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 RENBPP51606 427 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 SULT2A1Q06520 285 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 MAPRE1Q15691 268 aaKnown RBP16.99■□□□□ 0.31
USP28-208ENST00000540438 FSCBQ5H9T9 825 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 STXBP5Q5T5C0 1151 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 C2CD4AQ8NCU7 369 aaPredicted RBP16.99■□□□□ 0.31
USP28-208ENST00000540438 TSGA13Q96PP4 275 aa16.99■□□□□ 0.31
USP28-208ENST00000540438 VWA7Q9Y334 891 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms