RNA–Protein interactions for RNA: ENST00000539934.5

DDX55-206, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 2,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-206ENST00000539934 ZNF486Q96H40 463 aaPredicted RBP12.7□□□□□ -0.38
DDX55-206ENST00000539934 PCDHB18PQ96TA0 734 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 PHOX2BQ99453 314 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 C19orf43Q9BQ61 176 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 C17orf62Q9BQA9 187 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 TMEM168Q9H0V1 697 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 CDT1Q9H211 546 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 FAM105AQ9NUU6 356 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 RNF14Q9UBS8 474 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 CYB5R1Q9UHQ9 305 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 MAD1L1Q9Y6D9 718 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 SGK1O00141 431 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 KCNK3O14649 394 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 OR6B1O95007 311 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 PMLP29590 882 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 NOS2P35228 1153 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 ADH7P40394 386 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 PPM1FP49593 454 aaPredicted RBP12.7□□□□□ -0.38
DDX55-206ENST00000539934 MAN2A2P49641 1150 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 NUP107P57740 925 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 GPC5P78333 572 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 TFAMQ00059 246 aaKnown RBP12.7□□□□□ -0.38
DDX55-206ENST00000539934 SLC34A1Q06495 639 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 COTL1Q14019 142 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 POU6F1Q14863 301 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 UGP2Q16851 508 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 FAM187BQ17R55 369 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 DUOXA2Q1HG44 320 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 FBXO48Q5FWF7 155 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 C6orf163Q5TEZ5 329 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 ARHGAP11AQ6P4F7 1023 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 BNC2Q6ZN30 1099 aaPredicted RBP12.7□□□□□ -0.38
DDX55-206ENST00000539934 AFAP1L2Q8N4X5 818 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 PIK3C3Q8NEB9 887 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 SPATA4Q8NEY3 305 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 MARC2Q969Z3 335 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 ZC3H10Q96K80 434 aaKnown RBP12.7□□□□□ -0.38
DDX55-206ENST00000539934 ZFRQ96KR1 1074 aaKnown RBP12.7□□□□□ -0.38
DDX55-206ENST00000539934 RPF1Q9H9Y2 349 aaKnown RBP12.7□□□□□ -0.38
DDX55-206ENST00000539934 APOBEC3GQ9HC16 384 aaKnown RBP12.7□□□□□ -0.38
DDX55-206ENST00000539934 TIGARQ9NQ88 270 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 SMARCAL1Q9NZC9 954 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 VTI1BQ9UEU0 232 aa12.7□□□□□ -0.38
DDX55-206ENST00000539934 SMG5Q9UPR3 1016 aaKnown RBP12.7□□□□□ -0.38
DDX55-206ENST00000539934 RASGRF2O14827 1237 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 OAS1P00973 400 aaKnown RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 APOA4P06727 396 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 PFKMP08237 780 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 KRT3P12035 628 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 TYK2P29597 1187 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 CDH5P33151 784 aaPredicted RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 WDR5P61964 334 aaKnown RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 NHLH1Q02575 133 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 GPNMBQ14956 572 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 CACHD1Q5VU97 1274 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 ANKRD42Q8N9B4 389 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 FAM13CQ8NE31 585 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 OR52K1Q8NGK4 314 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 TRMT2BQ96GJ1 504 aaKnown RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 MS4A14Q96JA4 679 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 CCDC134Q9H6E4 229 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 SETD4Q9NVD3 440 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 AMFRQ9UKV5 643 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 GINS2Q9Y248 185 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 INVSQ9Y283 1065 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 B3GNT3Q9Y2A9 372 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 RRN3P2A6NIE6 340 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 PRR33A8MZF0 331 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 AKAP10O43572 662 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 PTP4A3O75365 173 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 UNC5CO95185 931 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 CST3P01034 146 aaPredicted RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 TNNC2P02585 160 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 DBTP11182 482 aaKnown RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 MYL4P12829 197 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 SLC5A2P31639 672 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 SLC12A2P55011 1212 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 POU6F2P78424 691 aaPredicted RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 TSC22D1Q15714 1073 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 MARCH8Q5T0T0 291 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 PTCRAQ6ISU1 281 aaPredicted RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 TMEM270Q6UE05 265 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 MACC1Q6ZN28 852 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 PLEKHM3Q6ZWE6 761 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 ZNF572Q7Z3I7 529 aaPredicted RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 P3H2Q8IVL5 708 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 DDX1Q92499 740 aaKnown RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 CPB2Q96IY4 423 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 ZNF560Q96MR9 790 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 ZNF641Q96N77 438 aaPredicted RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 SLC4A5Q9BY07 1137 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 PABPC3Q9H361 631 aaKnown RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 TRIM45Q9H8W5 580 aaPredicted RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 RC3H2Q9HBD1 1191 aaKnown RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 RXFP1Q9HBX9 757 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 SYBUQ9NX95 663 aa12.69□□□□□ -0.38
DDX55-206ENST00000539934 PTPRZ1P23471 2315 aaPredicted RBP12.69□□□□□ -0.38
DDX55-206ENST00000539934 DNAH14Q0VDD8 3507 aa12.68□□□□□ -0.38
DDX55-206ENST00000539934 TOR1AO14656 332 aa12.68□□□□□ -0.38
DDX55-206ENST00000539934 IL18RAPO95256 599 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms