RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 MUC3BQ9H195 1237 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 VCXQ9H320 206 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 LSM7Q9UK45 103 aaKnown RBP17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 CCL26Q9Y258 94 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 SH3BP1Q9Y3L3 701 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 ZCWPW2A0A1B0GU75 182 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 FAM237BA0A1B0GVD1 139 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 H0Y626 953 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 CBX4O00257 560 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 GFRA2O00451 464 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 MOSPD3O75425 235 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 PTPN2P17706 415 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 PBX2P40425 430 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 MAGEA10P43363 369 aaPredicted RBP17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 ZNF235Q14590 738 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 POU6F1Q14863 301 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 TEAD2Q15562 447 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 SPANXN3Q5MJ09 141 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 GPR158Q5T848 1215 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 HTR3DQ70Z44 454 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 SLC25A41Q8N5S1 370 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 PPP1R2P1Q96PQ5 205 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 SEMA3CQ99985 751 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 ACE2Q9BYF1 805 aaPredicted RBP17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 TRIM4Q9C037 500 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 NMUR2Q9GZQ4 415 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 ARMCX1Q9P291 453 aa17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 YBX2Q9Y2T7 364 aaKnown RBP17.23■□□□□ 0.35
PCDHB17P-201ENST00000539533 LEFTY2O00292 366 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 KLF11O14901 512 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 USP1O94782 785 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 RHOP08100 348 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 NMBRP28336 390 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 MZF1P28698 734 aaPredicted RBP17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 EPHA5P54756 1037 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 NTHL1P78549 312 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 GPM6BQ13491 265 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 ZRSR2Q15696 482 aaKnown RBP17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 TTC39BQ5VTQ0 682 aaPredicted RBP17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 WFDC5Q8TCV5 224 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 CERS2Q96G23 380 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 ZNF180Q9UJW8 692 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 SOX13Q9UN79 622 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 MAGEB16A2A368 324 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 AP3B1O00203 1094 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 PGM1P36871 562 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 BMPR2Q13873 1038 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 ALYREFQ86V81 257 aaKnown RBP17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 FAM217AQ8IXS0 508 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 ARHGAP24Q8N264 748 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 HJURPQ8NCD3 748 aaPredicted RBP17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 ZNF599Q96NL3 588 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 SRPK1Q96SB4 655 aaKnown RBP17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 POLR1EQ9GZS1 481 aaKnown RBP17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 IRAK4Q9NWZ3 460 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 PLK2Q9NYY3 685 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 UBA2Q9UBT2 640 aaPredicted RBP17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 PSAT1Q9Y617 370 aa17.22■□□□□ 0.35
PCDHB17P-201ENST00000539533 HMX2A2RU54 273 aa17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 TRIM49D1C9J1S8 452 aa17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 POLE2P56282 527 aa17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 THOC5Q13769 683 aaKnown RBP17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 OR52E8Q6IFG1 317 aa17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 TPGS1Q6ZTW0 290 aa17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 ADGRD2Q7Z7M1 963 aa17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 PPFIBP2Q8ND30 876 aa17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 DDI1Q8WTU0 396 aa17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 KIFC1Q9BW19 673 aa17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 IQCGQ9H095 443 aaKnown RBP17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 VPS45Q9NRW7 570 aa17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 SCOCQ9UIL1 159 aa17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 HCFC2Q9Y5Z7 792 aa17.21■□□□□ 0.35
PCDHB17P-201ENST00000539533 COPEO14579 308 aa17.21■□□□□ 0.34
PCDHB17P-201ENST00000539533 SNAP91O60641 907 aa17.21■□□□□ 0.34
PCDHB17P-201ENST00000539533 LAMB3Q13751 1172 aa17.21■□□□□ 0.34
PCDHB17P-201ENST00000539533 MROH9Q5TGP6 573 aa17.21■□□□□ 0.34
PCDHB17P-201ENST00000539533 LINGO4Q6UY18 593 aa17.21■□□□□ 0.34
PCDHB17P-201ENST00000539533 CDHR3Q6ZTQ4 885 aa17.21■□□□□ 0.34
PCDHB17P-201ENST00000539533 CMTM8Q8IZV2 173 aa17.21■□□□□ 0.34
PCDHB17P-201ENST00000539533 TDRD5Q8NAT2 981 aaKnown RBP17.21■□□□□ 0.34
PCDHB17P-201ENST00000539533 RIN3Q8TB24 985 aa17.21■□□□□ 0.34
PCDHB17P-201ENST00000539533 CDKL2Q92772 493 aa17.21■□□□□ 0.34
PCDHB17P-201ENST00000539533 TADA1Q96BN2 335 aa17.21■□□□□ 0.34
PCDHB17P-201ENST00000539533 MAP3K7O43318 606 aa17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 KRT37O76014 449 aa17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 F7P08709 466 aaPredicted RBP17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 SNRPAP09012 282 aaKnown RBP17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 AVPR1AP37288 418 aa17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 RGRP47804 291 aa17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 CPA2P48052 419 aa17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 RAP1GDS1P52306 607 aa17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 ERVK-21P61565 698 aa17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 ARF5P84085 180 aa17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 PCID2Q5JVF3 399 aa17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 MARK2Q7KZI7 788 aaKnown RBP17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 GRASPQ7Z6J2 395 aaPredicted RBP17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 RASSF3Q86WH2 238 aa17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 SH3RF2Q8TEC5 729 aa17.2■□□□□ 0.34
PCDHB17P-201ENST00000539533 ATP2A3Q93084 1043 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms