RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 TIMP2P16035 220 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 CCNHP51946 323 aaPredicted RBP9.24□□□□□ -0.93
USP28-205ENST00000537706 DNASE1L3Q13609 305 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 KNOP1Q1ED39 458 aaKnown RBP9.24□□□□□ -0.93
USP28-205ENST00000537706 NKAIN2Q5VXU1 208 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 TTC7BQ86TV6 843 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 TAC4Q86UU9 113 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 OSBPL1AQ9BXW6 950 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 ING2Q9H160 280 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 KIAA1257Q9ULG3 409 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 ITM2BQ9Y287 266 aa9.24□□□□□ -0.93
USP28-205ENST00000537706 ARGFXA6NJG6 315 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 C21orf140B9A014 251 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 TNFRSF10CO14798 259 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 VDRP11473 427 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 GJB2P29033 226 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 RGS7P49802 495 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 DLG4P78352 724 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 ILF3Q12906 894 aaKnown RBP eCLIP9.23□□□□□ -0.93
USP28-205ENST00000537706 MTM1Q13496 603 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 CUL4AQ13619 759 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 UGT8Q16880 541 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 FBXL22Q6P050 247 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 XYLT1Q86Y38 959 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 PDXPQ96GD0 296 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 TRPM6Q9BX84 2022 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 ILKAPQ9H0C8 392 aaPredicted RBP9.23□□□□□ -0.93
USP28-205ENST00000537706 TNMDQ9H2S6 317 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 OSGIN2Q9Y236 505 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 TBC1D30Q9Y2I9 924 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 SVILO95425 2214 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 PDE2AO00408 941 aaPredicted RBP9.23□□□□□ -0.93
USP28-205ENST00000537706 SMAD6O43541 496 aaKnown RBP9.23□□□□□ -0.93
USP28-205ENST00000537706 KLHL41O60662 606 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 ADCY5O95622 1261 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 KRT13P13646 458 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 CCR1P32246 355 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 GARSP41250 739 aaKnown RBP9.23□□□□□ -0.93
USP28-205ENST00000537706 KIAA1024LP59773 190 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 RAD51Q06609 339 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 ELP6Q0PNE2 266 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 INPP5AQ14642 412 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 CYB5D1Q6P9G0 228 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 LINGO4Q6UY18 593 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 BEND5Q7L4P6 421 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 SETD3Q86TU7 594 aaPredicted RBP9.23□□□□□ -0.93
USP28-205ENST00000537706 GALNT6Q8NCL4 622 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 INTS4Q96HW7 963 aaKnown RBP9.23□□□□□ -0.93
USP28-205ENST00000537706 TMX3Q96JJ7 454 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 HSFY1Q96LI6 401 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 PSMB7Q99436 277 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 PRMT1Q99873 361 aaKnown RBP9.23□□□□□ -0.93
USP28-205ENST00000537706 MIS12Q9H081 205 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 TMEM168Q9H0V1 697 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 SUCOQ9UBS9 1254 aaKnown RBP9.23□□□□□ -0.93
USP28-205ENST00000537706 PADI1Q9ULC6 663 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 SHANK1Q9Y566 2161 aa9.23□□□□□ -0.93
USP28-205ENST00000537706 RNF103O00237 685 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 ECEL1O95672 775 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 PCCBP05166 539 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 SUOXP51687 545 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 VAMP7P51809 220 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 FOXM1Q08050 763 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 DPYDQ12882 1025 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 LYPLAL1Q5VWZ2 237 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 RASGRP3Q8IV61 690 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 RBMXL3Q8N7X1 1067 aaKnown RBP9.22□□□□□ -0.93
USP28-205ENST00000537706 TAS1R2Q8TE23 839 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 OR1E3Q8WZA6 343 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 SLC38A3Q99624 504 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 WRAP53Q9BUR4 548 aaKnown RBP9.22□□□□□ -0.93
USP28-205ENST00000537706 FAM204AQ9H8W3 233 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 APMAPQ9HDC9 416 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 C5AR2Q9P296 337 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 PDP2Q9P2J9 529 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 VANGL2Q9ULK5 521 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 OR1A2Q9Y585 309 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 UNC13CQ8NB66 2214 aa9.22□□□□□ -0.93
USP28-205ENST00000537706 SSU72P8A0A1W2PR75 194 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 PIK3R2O00459 728 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 AREL1O15033 823 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 PRICKLE3O43900 615 aaPredicted RBP9.21□□□□□ -0.93
USP28-205ENST00000537706 RHOBTB3O94955 611 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 TRUB2O95900 331 aaKnown RBP9.21□□□□□ -0.93
USP28-205ENST00000537706 CCNB1P14635 433 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 CSF2RBP32927 897 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 SERPINH1P50454 418 aaKnown RBP9.21□□□□□ -0.93
USP28-205ENST00000537706 RPS15P62841 145 aaKnown RBP9.21□□□□□ -0.93
USP28-205ENST00000537706 CHAF1BQ13112 559 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 AUHQ13825 339 aaKnown RBP9.21□□□□□ -0.93
USP28-205ENST00000537706 POLD3Q15054 466 aaPredicted RBP9.21□□□□□ -0.93
USP28-205ENST00000537706 STILQ15468 1287 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 CPZQ66K79 652 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 BRAPQ7Z569 592 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 C17orf82Q86X59 251 aaPredicted RBP9.21□□□□□ -0.93
USP28-205ENST00000537706 SLC9A9Q8IVB4 645 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 PLPP6Q8IY26 295 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 OR52K2Q8NGK3 314 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 CHTF18Q8WVB6 975 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 RANBP9Q96S59 729 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms