RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 KRIT1O00522 736 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 SCAMP1O15126 338 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 RAD51BO15315 384 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 SPINT1O43278 529 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 DAPK3O43293 454 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 USP12O75317 370 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 IGSF6O95976 241 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 PEX11BO96011 259 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 TPM1P09493 284 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 ARL4AP40617 200 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 RHOAP61586 193 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 GABREP78334 506 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 TSR1Q2NL82 804 aaKnown RBP12.57□□□□□ -0.4
PRKDC-207ENST00000536483 PPP6R3Q5H9R7 873 aaPredicted RBP12.57□□□□□ -0.4
PRKDC-207ENST00000536483 TXNRD3NBQ6F5E7 133 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 PCSK4Q6UW60 755 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 PTAR1Q7Z6K3 402 aaPredicted RBP12.57□□□□□ -0.4
PRKDC-207ENST00000536483 DCP2Q8IU60 420 aaKnown RBP12.57□□□□□ -0.4
PRKDC-207ENST00000536483 ZNF843Q8N446 348 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 RNF214Q8ND24 703 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 ZNF248Q8NDW4 579 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 ZNF564Q8TBZ8 553 aaPredicted RBP12.57□□□□□ -0.4
PRKDC-207ENST00000536483 CTNNBL1Q8WYA6 563 aaPredicted RBP12.57□□□□□ -0.4
PRKDC-207ENST00000536483 ANP32BQ92688 251 aaKnown RBP12.57□□□□□ -0.4
PRKDC-207ENST00000536483 FATE1Q969F0 183 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 IFT43Q96FT9 208 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 ZNF578Q96N58 590 aaPredicted RBP12.57□□□□□ -0.4
PRKDC-207ENST00000536483 DEPDC7Q96QD5 511 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 PSKH2Q96QS6 385 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 CHP1Q99653 195 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 SLC17A9Q9BYT1 436 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 ABCG4Q9H172 646 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 ZDHHC6Q9H6R6 413 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 NHEJ1Q9H9Q4 299 aaPredicted RBP12.57□□□□□ -0.4
PRKDC-207ENST00000536483 PCDH18Q9HCL0 1135 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.57□□□□□ -0.4
PRKDC-207ENST00000536483 U3KQA8 63 aa12.57□□□□□ -0.4
PRKDC-207ENST00000536483 SETXQ7Z333 2677 aaKnown RBP12.56□□□□□ -0.4
PRKDC-207ENST00000536483 ATMQ13315 3056 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 TRPM6Q9BX84 2022 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 CFAP69A5D8W1 941 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 ZNF487B1APH4 448 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 CSO75390 466 aaKnown RBP12.56□□□□□ -0.4
PRKDC-207ENST00000536483 UGT2B4P06133 528 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 GP1BAP07359 652 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 TIMP2P16035 220 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 GKP32189 559 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 ARHGAP25P42331 645 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 ABL2P42684 1182 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 DUSP3P51452 185 aaPredicted RBP12.56□□□□□ -0.4
PRKDC-207ENST00000536483 PCBP4P57723 403 aaKnown RBP12.56□□□□□ -0.4
PRKDC-207ENST00000536483 HNRNPKP61978 463 aaKnown RBP eCLIP12.56□□□□□ -0.4
PRKDC-207ENST00000536483 FZD2Q14332 565 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 AGERQ15109 404 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 HADHQ16836 314 aaKnown RBP12.56□□□□□ -0.4
PRKDC-207ENST00000536483 ATXN7L2Q5T6C5 722 aaPredicted RBP12.56□□□□□ -0.4
PRKDC-207ENST00000536483 BRAT1Q6PJG6 821 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 KYAT3Q6YP21 454 aaKnown RBP12.56□□□□□ -0.4
PRKDC-207ENST00000536483 LEKR1Q6ZMV7 388 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 VSIG1Q86XK7 387 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 LSMEM2Q8N112 164 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 FAM181AQ8N9Y4 354 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 DENND6BQ8NEG7 585 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 MAPK15Q8TD08 544 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 FAF2Q96CS3 445 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 ECHDC3Q96DC8 303 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 CELF6Q96J87 481 aaKnown RBP12.56□□□□□ -0.4
PRKDC-207ENST00000536483 HIC2Q96JB3 615 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 BTBD6Q96KE9 485 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 CCDC42Q96M95 316 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 KLHL32Q96NJ5 620 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 KLF6Q99612 283 aaPredicted RBP12.56□□□□□ -0.4
PRKDC-207ENST00000536483 DUSP23Q9BVJ7 150 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 PACSIN1Q9BY11 444 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 SUV39H2Q9H5I1 410 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 ETNK2Q9NVF9 386 aa12.56□□□□□ -0.4
PRKDC-207ENST00000536483 IPO11Q9UI26 975 aaKnown RBP12.56□□□□□ -0.4
PRKDC-207ENST00000536483 SPTY2D1-AS1A0A0U1RR47 76 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 AKR1B15C9JRZ8 316 aaPredicted RBP12.55□□□□□ -0.4
PRKDC-207ENST00000536483 AKR1B10O60218 316 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 BUB1BO60566 1050 aaPredicted RBP12.55□□□□□ -0.4
PRKDC-207ENST00000536483 MAFKO60675 156 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 PALMO75781 387 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 LCA5LO95447 670 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 CSF2P04141 144 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 PLA2G2AP14555 144 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 CR2P20023 1033 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 AMPD1P23109 780 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 SERPINB6P35237 376 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 HSPA9P38646 679 aaKnown RBP12.55□□□□□ -0.4
PRKDC-207ENST00000536483 LSSP48449 732 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 RENBPP51606 427 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 ADKP55263 362 aaKnown RBP12.55□□□□□ -0.4
PRKDC-207ENST00000536483 CFHR1Q03591 330 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 PAFAH1B3Q15102 231 aaKnown RBP12.55□□□□□ -0.4
PRKDC-207ENST00000536483 PDK2Q15119 407 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 SMTNL2Q2TAL5 461 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 TMEM52BQ4KMG9 183 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 RALGPS1Q5JS13 557 aa12.55□□□□□ -0.4
PRKDC-207ENST00000536483 TMCO3Q6UWJ1 677 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms