RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CES1P23141 567 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 ATXN3P54252 364 aaPredicted RBP13.07□□□□□ -0.32
VPS28-216ENST00000533806 NAP1L1P55209 391 aaKnown RBP13.07□□□□□ -0.32
VPS28-216ENST00000533806 POLR2LP62875 67 aaKnown RBP13.07□□□□□ -0.32
VPS28-216ENST00000533806 DYNLT1P63172 113 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 NIPAL4Q0D2K0 466 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 ELP6Q0PNE2 266 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 RALGDSQ12967 914 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 STAT4Q14765 748 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 PRKD1Q15139 912 aaPredicted RBP13.07□□□□□ -0.32
VPS28-216ENST00000533806 LLGL1Q15334 1064 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.07□□□□□ -0.32
VPS28-216ENST00000533806 SEMA3CQ99985 751 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 POLR1EQ9GZS1 481 aaKnown RBP13.07□□□□□ -0.32
VPS28-216ENST00000533806 ERVMER34-1Q9H9K5 563 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 FZD3Q9NPG1 666 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 PCDHGB2Q9Y5G2 931 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 CAPN6Q9Y6Q1 641 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 PLXNA2O75051 1894 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 NCOR2Q9Y618 2525 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 A0A1B0GTQ1 180 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 A0A1W2PQ67 120 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 POM121BA6NF01 834 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 NEMP1O14524 444 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 DDX3YO15523 660 aaKnown RBP13.06□□□□□ -0.32
VPS28-216ENST00000533806 DFNA5O60443 496 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 PGLSO95336 258 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 PRLP01236 227 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 PRKCGP05129 697 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 PDHA1P08559 390 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 PYGMP11217 842 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 GM2AP17900 193 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 AKT2P31751 481 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 RXRGP48443 463 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 RWDD2BP57060 319 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 C21orf59P57076 290 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 CLDN2P57739 230 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 DSC2Q02487 901 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 UAP1L1Q3KQV9 507 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 ODF2Q5BJF6 829 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 KAZNQ674X7 775 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 DPPA4Q7L190 304 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 ERMP1Q7Z2K6 904 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 DGLUCYQ7Z3D6 616 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 ADAT2Q7Z6V5 191 aaKnown RBP13.06□□□□□ -0.32
VPS28-216ENST00000533806 DENND6BQ8NEG7 585 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 OR13H1Q8NG92 308 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 FAM174AQ8TBP5 190 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 PIH1D2Q8WWB5 315 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 SKA1Q96BD8 255 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 TADA1Q96BN2 335 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 HES6Q96HZ4 224 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 ZNF830Q96NB3 372 aaPredicted RBP13.06□□□□□ -0.32
VPS28-216ENST00000533806 MCCC1Q96RQ3 725 aaPredicted RBP13.06□□□□□ -0.32
VPS28-216ENST00000533806 ELF4Q99607 663 aaPredicted RBP13.06□□□□□ -0.32
VPS28-216ENST00000533806 WRAP53Q9BUR4 548 aaKnown RBP13.06□□□□□ -0.32
VPS28-216ENST00000533806 TM7SF3Q9NS93 570 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 PCDHB9Q9Y5E1 797 aa13.06□□□□□ -0.32
VPS28-216ENST00000533806 ASCC3Q8N3C0 2202 aaKnown RBP13.05□□□□□ -0.32
VPS28-216ENST00000533806 SPTBN2O15020 2390 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 MIF4GDA9UHW6 222 aaKnown RBP13.05□□□□□ -0.32
VPS28-216ENST00000533806 APOC4-APOC2K7ER74 178 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 PPP1R12AO14974 1030 aaPredicted RBP13.05□□□□□ -0.32
VPS28-216ENST00000533806 PCDHGA12O60330 932 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 CBFA2T3O75081 653 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 TM7SF2O76062 418 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 KCNK5O95279 499 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 APOC2P02655 101 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 C6P13671 934 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 LIG3P49916 1009 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 PFN3P60673 137 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 WASHC5Q12768 1159 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 SGCGQ13326 291 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 SLC45A4Q5BKX6 768 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 PRAMEF14Q5SWL7 426 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 FAM182AQ5T1J6 154 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 AADACL2Q6P093 401 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 ERAP2Q6P179 960 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 LIPIQ6XZB0 460 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 KYAT3Q6YP21 454 aaKnown RBP13.05□□□□□ -0.32
VPS28-216ENST00000533806 B4GALNT4Q76KP1 1039 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 BZW1Q7L1Q6 419 aaKnown RBP13.05□□□□□ -0.32
VPS28-216ENST00000533806 KANSL1Q7Z3B3 1105 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 PEX26Q7Z412 305 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 SYCE1Q8N0S2 351 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 SLC22A18ASQ8N1D0 253 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 TP53I13Q8NBR0 393 aaPredicted RBP13.05□□□□□ -0.32
VPS28-216ENST00000533806 CXorf40AQ8TE69 158 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 UBE2Q2Q8WVN8 375 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 P3H4Q92791 437 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 SCRN2Q96FV2 425 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 KLHDC7BQ96G42 594 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 HEMGNQ9BXL5 484 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 OSBPL8Q9BZF1 889 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 TSGA10Q9BZW7 698 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 GDF3Q9NR23 364 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 MBNL1Q9NR56 388 aaKnown RBP13.05□□□□□ -0.32
VPS28-216ENST00000533806 AMFRQ9UKV5 643 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 PHTF1Q9UMS5 762 aa13.05□□□□□ -0.32
VPS28-216ENST00000533806 RAI2Q9Y5P3 530 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms