RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 B4GALNT4Q76KP1 1039 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 ANKRD18AQ8IVF6 992 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 PELI3Q8N2H9 469 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 GALNT15Q8N3T1 639 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 DCLK2Q8N568 766 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 SPATA18Q8TC71 538 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 GDPD5Q8WTR4 605 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 GLMPQ8WWB7 406 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 ASB12Q8WXK4 309 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 TRIM63Q969Q1 353 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 EID2BQ96D98 161 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 EIF3CQ99613 913 aaKnown RBP4.23□□□□□ -1.73
CD44-235ENST00000532339 PCDHAC1Q9H158 963 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 CDCP1Q9H5V8 836 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 TDRD3Q9H7E2 651 aaKnown RBP4.23□□□□□ -1.73
CD44-235ENST00000532339 ERVK-5Q9HDB9 667 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 RRN3Q9NYV6 651 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.23□□□□□ -1.73
CD44-235ENST00000532339 ZNF112Q9UJU3 913 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 ANAPC4Q9UJX5 808 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 LRRFIP2Q9Y608 721 aaKnown RBP4.23□□□□□ -1.73
CD44-235ENST00000532339 IGSF10Q6WRI0 2623 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 WDFY3Q8IZQ1 3526 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 MROH7Q68CQ1 1323 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 SPTAN1Q13813 2472 aaKnown RBP4.22□□□□□ -1.73
CD44-235ENST00000532339 SIPA1L3O60292 1781 aaPredicted RBP4.22□□□□□ -1.73
CD44-235ENST00000532339 TEX15Q9BXT5 2789 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 ARAP2Q8WZ64 1704 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 TMEM272A0A1B0GTI8 110 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 OR2W5A6NFC9 320 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 EIF4E1BA6NMX2 242 aaKnown RBP4.22□□□□□ -1.73
CD44-235ENST00000532339 KIF28PB7ZC32 967 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 PCDH17O14917 1159 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 NCAM2O15394 837 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 CYBAP13498 195 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 AKR1A1P14550 325 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 STAT6P42226 847 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 MAPK9P45984 424 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 ARL4CP56559 192 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 FKBP1AP62942 108 aaKnown RBP4.22□□□□□ -1.73
CD44-235ENST00000532339 ATP1A4Q13733 1029 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 TAF5Q15542 800 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 ANXA2RQ3ZCQ2 193 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 DHRS13Q6UX07 377 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 MMS22LQ6ZRQ5 1243 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 TRAPPC11Q7Z392 1133 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 LAS2Q8IYD9 372 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 PAF1Q8N7H5 531 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 OR1N1Q8NGS0 311 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 PHOSPHO2Q8TCD6 241 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 GRAMD1AQ96CP6 724 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 CAMK1GQ96NX5 476 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 NUDT22Q9BRQ3 303 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 PAGR1Q9BTK6 254 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 MRPL44Q9H9J2 332 aaKnown RBP4.22□□□□□ -1.73
CD44-235ENST00000532339 RRP7AQ9Y3A4 280 aaKnown RBP4.22□□□□□ -1.73
CD44-235ENST00000532339 ZHX2Q9Y6X8 837 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 ITPR3Q14573 2671 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 TENM4Q6N022 2769 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 PIEZO2Q9H5I5 2752 aa4.22□□□□□ -1.73
CD44-235ENST00000532339 ITPR1Q14643 2758 aa4.21□□□□□ -1.73
CD44-235ENST00000532339 KIR2DS5A0A0G2JLQ3 304 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 LOC730098B7Z3J9 87 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 KIR2DS3K7RE56 304 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 SEPT4O43236 478 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 MBTPS2O43462 519 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 AGR2O95994 175 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 VIPP01282 170 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 MYL6BP14649 208 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 NPPBP16860 134 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 ICAM3P32942 547 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 AGTR2P50052 363 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 CLCN5P51795 746 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 PGGT1BP53609 377 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 PNLIPRP1P54315 467 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 NSUN2Q08J23 767 aaKnown RBP eCLIP4.21□□□□□ -1.74
CD44-235ENST00000532339 CBFBQ13951 182 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 ANGPT1Q15389 498 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 TIGD6Q17RP2 521 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 P3H1Q32P28 736 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 UBAP2Q5T6F2 1119 aaKnown RBP4.21□□□□□ -1.74
CD44-235ENST00000532339 LIPMQ5VYY2 423 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 GPR142Q7Z601 462 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 GATAD2AQ86YP4 633 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 RHPN2Q8IUC4 686 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 TRPV1Q8NER1 839 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 ZFPM2Q8WW38 1151 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 UBXN10Q96LJ8 280 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 TBATAQ96M53 351 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 PRPF18Q99633 342 aaKnown RBP4.21□□□□□ -1.74
CD44-235ENST00000532339 PIMREGQ9BSJ6 248 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 KRTAP2-2Q9BYT5 123 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 FZD3Q9NPG1 666 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 THSD1Q9NS62 852 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 CTNNA3Q9UI47 895 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 CA14Q9ULX7 337 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 DTNAQ9Y4J8 743 aa4.21□□□□□ -1.74
CD44-235ENST00000532339 LAMA5O15230 3695 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 A0A0G2JK05 382 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 LACTBL1A8MY62 500 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms