RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PPP1R2P1Q96PQ5 205 aa19.38■□□□□ 0.69
VPS28-213ENST00000530983 MRPS26Q9BYN8 205 aaKnown RBP19.38■□□□□ 0.69
VPS28-213ENST00000530983 PLK2Q9NYY3 685 aa19.38■□□□□ 0.69
VPS28-213ENST00000530983 SARDHQ9UL12 918 aa19.38■□□□□ 0.69
VPS28-213ENST00000530983 TTC3P53804 2025 aa19.38■□□□□ 0.69
VPS28-213ENST00000530983 PSMD12O00232 456 aaPredicted RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 TRIM24O15164 1050 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 UBDO15205 165 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 CCDC166P0CW27 439 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 ODC1P11926 461 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 CCR1P32246 355 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 WNT3AP56704 352 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 STX5Q13190 355 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 MAP7Q14244 749 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 FASTKQ14296 549 aaKnown RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 AGAP9Q5VTM2 703 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 TIGD7Q6NT04 549 aaPredicted RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 PAOXQ6QHF9 649 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 CASP10Q92851 521 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 CCDC126Q96EE4 140 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 PRPF18Q99633 342 aaKnown RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 SLC2A11Q9BYW1 496 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 SPON1Q9HCB6 807 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 MPP6Q9NZW5 540 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 CCDC167Q9P0B6 97 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 CNOT11Q9UKZ1 510 aaKnown RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 AK5Q9Y6K8 562 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 LTA4HP09960 611 aaKnown RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 ATP6V1B1P15313 513 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 RPL9P32969 192 aaKnown RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 HTR7P34969 479 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 RGS2P41220 211 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 LEPRP48357 1165 aaKnown RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 CLCN2P51788 898 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 MRPS6P82932 125 aaKnown RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 CREB5Q02930 508 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 USP41Q3LFD5 358 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 MGAT5BQ3V5L5 792 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 AGKQ53H12 422 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 IYDQ6PHW0 289 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 KDELC1Q6UW63 502 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 PTAR1Q7Z6K3 402 aaPredicted RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 SNX31Q8N9S9 440 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 OR10T2Q8NGX3 314 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 ANKRD49Q8WVL7 239 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 PHF21BQ96EK2 531 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 ZFRQ96KR1 1074 aaKnown RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 UBXN10Q96LJ8 280 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 TRIM62Q9BVG3 475 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 GRIP2Q9C0E4 1043 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 RBM38Q9H0Z9 239 aaKnown RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 EML4Q9HC35 981 aaKnown RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 CHCHD3Q9NX63 227 aaKnown RBP19.37■□□□□ 0.69
VPS28-213ENST00000530983 TRPM7Q96QT4 1865 aa19.37■□□□□ 0.69
VPS28-213ENST00000530983 PRORSD1PA6NEY8 169 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 FAM58BPP0C7Q3 252 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 BRCC3P46736 316 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 RALGDSQ12967 914 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 APOFQ13790 326 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 MAPRE2Q15555 327 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 SLC14A2Q15849 920 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 TOP1MTQ969P6 601 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 PARK7Q99497 189 aaKnown RBP19.36■□□□□ 0.69
VPS28-213ENST00000530983 PTPN18Q99952 460 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 KATNAL1Q9BW62 490 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 SMOC2Q9H3U7 446 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 TBC1D13Q9NVG8 400 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 AP4S1Q9Y587 144 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 HEATR9A2RTY3 570 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 HNRNPRO43390 633 aaKnown RBP19.36■□□□□ 0.69
VPS28-213ENST00000530983 CLCN5P51795 746 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 RHDQ02161 417 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 IRF5Q13568 498 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 CYHR1Q6ZMK1 362 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 C14orf80Q86SX3 495 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 RTL3Q8N8U3 475 aaKnown RBP19.36■□□□□ 0.69
VPS28-213ENST00000530983 OR13J1Q8NGT2 312 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 EME1Q96AY2 570 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 SEMA6AQ9H2E6 1030 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 GSTO2Q9H4Y5 243 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 ARNT2Q9HBZ2 717 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 ABCC13Q9NSE7 274 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 MRGBPQ9NV56 204 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 IPO11Q9UI26 975 aaKnown RBP19.36■□□□□ 0.69
VPS28-213ENST00000530983 NUDT5Q9UKK9 219 aa19.36■□□□□ 0.69
VPS28-213ENST00000530983 TANC1Q9C0D5 1861 aa19.35■□□□□ 0.69
VPS28-213ENST00000530983 E9PAM4 449 aa19.35■□□□□ 0.69
VPS28-213ENST00000530983 UBFD1O14562 309 aaKnown RBP19.35■□□□□ 0.69
VPS28-213ENST00000530983 MOCS2O96007 188 aaPredicted RBP19.35■□□□□ 0.69
VPS28-213ENST00000530983 PEX11BO96011 259 aa19.35■□□□□ 0.69
VPS28-213ENST00000530983 PURAQ00577 322 aaKnown RBP19.35■□□□□ 0.69
VPS28-213ENST00000530983 GALNT1Q10472 559 aaPredicted RBP19.35■□□□□ 0.69
VPS28-213ENST00000530983 CCL14Q16627 93 aa19.35■□□□□ 0.69
VPS28-213ENST00000530983 MORN1Q5T089 497 aa19.35■□□□□ 0.69
VPS28-213ENST00000530983 TAF2Q6P1X5 1199 aa19.35■□□□□ 0.69
VPS28-213ENST00000530983 KLC3Q6P597 504 aa19.35■□□□□ 0.69
VPS28-213ENST00000530983 KLHDC10Q6PID8 442 aa19.35■□□□□ 0.69
VPS28-213ENST00000530983 AFAP1L2Q8N4X5 818 aa19.35■□□□□ 0.69
VPS28-213ENST00000530983 CALML6Q8TD86 181 aa19.35■□□□□ 0.69
VPS28-213ENST00000530983 HASPINQ8TF76 798 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms