RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PIRTP0C851 137 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 PTPN2P17706 415 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 ACTN3Q08043 901 aaPredicted RBP20.82■□□□□ 0.92
VPS28-209ENST00000528142 CCDC15Q0P6D6 951 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 ZNF789Q5FWF6 425 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 CNSTQ6PJW8 725 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 PTAR1Q7Z6K3 402 aaPredicted RBP20.82■□□□□ 0.92
VPS28-209ENST00000528142 CILP2Q8IUL8 1156 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 CEP97Q8IW35 865 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 LMNTD2Q8IXW0 634 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 SH3RF2Q8TEC5 729 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 DNAJC1Q96KC8 554 aaKnown RBP20.82■□□□□ 0.92
VPS28-209ENST00000528142 TBATAQ96M53 351 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 C20orf27Q9GZN8 174 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 ZNF395Q9H8N7 513 aaPredicted RBP20.82■□□□□ 0.92
VPS28-209ENST00000528142 KCNK13Q9HB14 408 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 FBXO6Q9NRD1 293 aaPredicted RBP20.82■□□□□ 0.92
VPS28-209ENST00000528142 TLK1Q9UKI8 766 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 CCL26Q9Y258 94 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 PCDHGC4Q9Y5F7 938 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 SPO11Q9Y5K1 396 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 RAI2Q9Y5P3 530 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 MIA3Q5JRA6 1907 aa20.82■□□□□ 0.92
VPS28-209ENST00000528142 DENND4CQ5VZ89 1909 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 PHGDHO43175 533 aaKnown RBP20.81■□□□□ 0.92
VPS28-209ENST00000528142 UBOX5O94941 541 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 MT-CO1P00395 513 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 DLDP09622 509 aaKnown RBP20.81■□□□□ 0.92
VPS28-209ENST00000528142 KCNA4P22459 653 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 DDX6P26196 483 aaKnown RBP eCLIP20.81■□□□□ 0.92
VPS28-209ENST00000528142 HOXA9P31269 272 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 SCTRP47872 440 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 PGGT1BP53609 377 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 RAB10P61026 200 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 PRAMEP78395 509 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 STX3Q13277 289 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 SLC12A1Q13621 1099 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 PTPRCAPQ14761 206 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 TEAD2Q15562 447 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 TPGS1Q6ZTW0 290 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 RAPH1Q70E73 1250 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 LCA5Q86VQ0 697 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 C10orf107Q8IVU9 208 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 CMTM8Q8IZV2 173 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 GBP7Q8N8V2 638 aaPredicted RBP20.81■□□□□ 0.92
VPS28-209ENST00000528142 OR6P1Q8NGX9 317 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 FIBINQ8TAL6 211 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 STYXQ8WUJ0 223 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 MTIF3Q9H2K0 278 aaKnown RBP20.81■□□□□ 0.92
VPS28-209ENST00000528142 PLK2Q9NYY3 685 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 FCF1Q9Y324 198 aaKnown RBP20.81■□□□□ 0.92
VPS28-209ENST00000528142 LAMA3Q16787 3333 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 CLASP2O75122 1294 aaKnown RBP20.81■□□□□ 0.92
VPS28-209ENST00000528142 RPP40O75818 363 aaKnown RBP20.81■□□□□ 0.92
VPS28-209ENST00000528142 RB1P06400 928 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 RHOP08100 348 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 COL6A2P12110 1019 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 CPA3P15088 417 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 EPCAMP16422 314 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 SAT1P21673 171 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 PSMA3P25788 255 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 TAS2R39P59534 338 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 POU4F1Q01851 419 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 TRAF2Q12933 501 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 ZCCHC23Q6ZST2 131 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 TMEM151AQ8N4L1 468 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 OR13C4Q8NGS5 318 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 OR6Y1Q8NGX8 325 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 RIN3Q8TB24 985 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 OMDQ99983 421 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 C2orf49Q9BVC5 232 aaPredicted RBP20.81■□□□□ 0.92
VPS28-209ENST00000528142 TASP1Q9H6P5 420 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 NMRAL1Q9HBL8 299 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 THAP1Q9NVV9 213 aa20.81■□□□□ 0.92
VPS28-209ENST00000528142 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.81■□□□□ 0.92
VPS28-209ENST00000528142 MARCH4Q9P2E8 410 aaPredicted RBP20.81■□□□□ 0.92
VPS28-209ENST00000528142 OR51F1A6NGY5 319 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 G3V2L1 256 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 BUD23O43709 281 aaKnown RBP20.8■□□□□ 0.92
VPS28-209ENST00000528142 S1PR4O95977 384 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 STMN1P16949 149 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 CRABP2P29373 138 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 AVPR1AP37288 418 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 LIG3P49916 1009 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 RHOAP61586 193 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 LMAN2Q12907 356 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 SLC5A9Q2M3M2 681 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 TAF1BQ53T94 588 aaPredicted RBP20.8■□□□□ 0.92
VPS28-209ENST00000528142 RALGPS1Q5JS13 557 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 TNS4Q8IZW8 715 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 CENPLQ8N0S6 344 aaPredicted RBP20.8■□□□□ 0.92
VPS28-209ENST00000528142 GPR150Q8NGU9 434 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 RMDN1Q96DB5 314 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 ELMO2Q96JJ3 720 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 LMLNQ96KR4 655 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 SUDS3Q9H7L9 328 aaPredicted RBP20.8■□□□□ 0.92
VPS28-209ENST00000528142 KIAA1522Q9P206 1035 aaPredicted RBP20.8■□□□□ 0.92
VPS28-209ENST00000528142 DCTN4Q9UJW0 460 aa20.8■□□□□ 0.92
VPS28-209ENST00000528142 YBX2Q9Y2T7 364 aaKnown RBP20.8■□□□□ 0.92
VPS28-209ENST00000528142 ACOT9Q9Y305 439 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms