RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 BLOC1S5Q8TDH9 187 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 HCAR2Q8TDS4 363 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 CSGALNACT1Q8TDX6 532 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 PTPRN2Q92932 1015 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 NXPE3Q969Y0 559 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 ZFYVE19Q96K21 471 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 FAM161BQ96MY7 647 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 C19orf43Q9BQ61 176 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 KXD1Q9BQD3 176 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 HEPHQ9BQS7 1158 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 FAM167BQ9BTA0 163 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 PLA2G2FQ9BZM2 168 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 TNKS2Q9H2K2 1166 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 SUV39H2Q9H5I1 410 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 POMKQ9H5K3 350 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 KCNK9Q9NPC2 374 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 PHTF1Q9UMS5 762 aa16.1■□□□□ 0.17
NUP54-214ENST00000514307 SMG5Q9UPR3 1016 aaKnown RBP16.1■□□□□ 0.17
NUP54-214ENST00000514307 TBC1D3BA6NDS4 549 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 CXorf49A8MYA2 514 aaPredicted RBP16.09■□□□□ 0.17
NUP54-214ENST00000514307 WASH3PC4AMC7 463 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 HTRA2O43464 458 aaPredicted RBP16.09■□□□□ 0.17
NUP54-214ENST00000514307 FZD6O60353 706 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 ZNF821O75541 412 aaPredicted RBP16.09■□□□□ 0.17
NUP54-214ENST00000514307 PRLP01236 227 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 C1QAP02745 245 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 BRAFP15056 766 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 LPOP22079 712 aaPredicted RBP16.09■□□□□ 0.17
NUP54-214ENST00000514307 SLC6A11P48066 632 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 SLC18A1P54219 525 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 CSE1LP55060 971 aaKnown RBP16.09■□□□□ 0.17
NUP54-214ENST00000514307 PRAMEP78395 509 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 TRAF2Q12933 501 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 GALNT3Q14435 633 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 QPCTQ16769 361 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 NEPROQ6NW34 567 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 TIFABQ6ZNK6 161 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 KIAA0408Q6ZU52 694 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 TRABD2AQ86V40 505 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 CAMK1DQ8IU85 385 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 SUSD6Q92537 303 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 ASIC4Q96FT7 647 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 BRD9Q9H8M2 597 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 SSU72Q9NP77 194 aaKnown RBP16.09■□□□□ 0.17
NUP54-214ENST00000514307 HPS4Q9NQG7 708 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 TREX1Q9NSU2 369 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 SUN2Q9UH99 717 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 CDH22Q9UJ99 828 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 USP15Q9Y4E8 981 aaPredicted RBP16.09■□□□□ 0.17
NUP54-214ENST00000514307 DENND4CQ5VZ89 1909 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 CDH23Q9H251 3354 aa16.09■□□□□ 0.17
NUP54-214ENST00000514307 OBSL1O75147 1896 aa16.08■□□□□ 0.17
NUP54-214ENST00000514307 NOTCH4Q99466 2003 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 ANHXE9PGG2 379 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 PFDN6O15212 129 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 LDB2O43679 373 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 GJB3O75712 270 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 FAM155BO75949 473 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 GJA4P35212 333 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 GRIA2P42262 883 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 ABL2P42684 1182 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 STK19P49842 368 aaPredicted RBP16.08■□□□□ 0.16
NUP54-214ENST00000514307 GRM2Q14416 872 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 SEPT7Q16181 437 aaKnown RBP16.08■□□□□ 0.16
NUP54-214ENST00000514307 TMEM215Q68D42 235 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 PACS1Q6VY07 963 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 GDPD4Q6W3E5 623 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 STRA8Q7Z7C7 330 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 SUGP1Q8IWZ8 645 aaKnown RBP16.08■□□□□ 0.16
NUP54-214ENST00000514307 SRRM1Q8IYB3 904 aaKnown RBP16.08■□□□□ 0.16
NUP54-214ENST00000514307 OR6P1Q8NGX9 317 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 SCG3Q8WXD2 468 aaKnown RBP16.08■□□□□ 0.16
NUP54-214ENST00000514307 MYO19Q96H55 970 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 MRGPRX3Q96LB0 322 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 TRIM56Q9BRZ2 755 aaKnown RBP16.08■□□□□ 0.16
NUP54-214ENST00000514307 OSBPL1AQ9BXW6 950 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 SMYD2Q9NRG4 433 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 IARS2Q9NSE4 1012 aaKnown RBP16.08■□□□□ 0.16
NUP54-214ENST00000514307 NKIRAS1Q9NYS0 192 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 CTNNAL1Q9UBT7 734 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 MYO7AQ13402 2215 aa16.08■□□□□ 0.16
NUP54-214ENST00000514307 TRAFD1O14545 582 aaPredicted RBP16.07■□□□□ 0.16
NUP54-214ENST00000514307 NPC1O15118 1278 aa16.07■□□□□ 0.16
NUP54-214ENST00000514307 STX7O15400 261 aaKnown RBP16.07■□□□□ 0.16
NUP54-214ENST00000514307 BNIP3LO60238 219 aa16.07■□□□□ 0.16
NUP54-214ENST00000514307 SIN3BO75182 1162 aa16.07■□□□□ 0.16
NUP54-214ENST00000514307 RPP40O75818 363 aaKnown RBP16.07■□□□□ 0.16
NUP54-214ENST00000514307 APODP05090 189 aa16.07■□□□□ 0.16
NUP54-214ENST00000514307 PDHA1P08559 390 aa16.07■□□□□ 0.16
NUP54-214ENST00000514307 PSMA3P25788 255 aa16.07■□□□□ 0.16
NUP54-214ENST00000514307 ARCN1P48444 511 aaKnown RBP16.07■□□□□ 0.16
NUP54-214ENST00000514307 CCNHP51946 323 aaPredicted RBP16.07■□□□□ 0.16
NUP54-214ENST00000514307 PTPN5P54829 565 aa16.07■□□□□ 0.16
NUP54-214ENST00000514307 ACVR1Q04771 509 aa16.07■□□□□ 0.16
NUP54-214ENST00000514307 EFTUD2Q15029 972 aaKnown RBP eCLIP16.07■□□□□ 0.16
NUP54-214ENST00000514307 MRNIPQ6NTE8 343 aa16.07■□□□□ 0.16
NUP54-214ENST00000514307 GLT6D1Q7Z4J2 308 aa16.07■□□□□ 0.16
NUP54-214ENST00000514307 OR2A12Q8NGT7 310 aa16.07■□□□□ 0.16
NUP54-214ENST00000514307 ACMSDQ8TDX5 336 aa16.07■□□□□ 0.16
NUP54-214ENST00000514307 PIH1D2Q8WWB5 315 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms