RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CENPNQ96H22 339 aaPredicted RBP12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 TSNARE1Q96NA8 513 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 YTHDF1Q9BYJ9 559 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 UCK2Q9BZX2 261 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 DNAI2Q9GZS0 605 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 PLAC1Q9HBJ0 212 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 SLC35C2Q9NQQ7 365 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 TBC1D13Q9NVG8 400 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 RBAKQ9NYW8 714 aaPredicted RBP12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 MYH9P35579 1960 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 TRDMT1O14717 391 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 RIMBP2O15034 1052 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 FSHRP23945 695 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 SERPINB9P50453 376 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 PPIL2Q13356 520 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 MEP1AQ16819 746 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 AGKQ53H12 422 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 IFNEQ86WN2 208 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 CBWD2Q8IUF1 395 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 CNTD1Q8N815 330 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 XXYLT1Q8NBI6 393 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 URGCPQ8TCY9 931 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 SEPT1Q8WYJ6 367 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 TTC9Q92623 222 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 MSANTD3Q96H12 275 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 PNPLA8Q9NP80 782 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 HSPBP1Q9NZL4 362 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 RIPK3Q9Y572 518 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 ZNF142P52746 1687 aaPredicted RBP12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 TNS3Q68CZ2 1445 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 CTDSP2O14595 271 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 TSC22D2O75157 780 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 RASAL1O95294 804 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 PIGNO95427 931 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 ARSAP15289 507 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 CYP2A7P20853 494 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 PSMA4P25789 261 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 ZNF76P36508 570 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 GP2P55259 537 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 RAD51Q06609 339 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 ATP6AP1Q15904 470 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 ZNF181Q2M3W8 571 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 CLYBLQ8N0X4 340 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 PIK3C3Q8NEB9 887 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 BCL7CQ8WUZ0 217 aaPredicted RBP12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 ROGDIQ9GZN7 287 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 KCNN2Q9H2S1 579 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 RIOX1Q9H6W3 641 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 PIH1D1Q9NWS0 290 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 MOCS1Q9NZB8 636 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 CPNE7Q9UBL6 633 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 SLC9A2Q9UBY0 812 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 EXTL3O43909 919 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 PDGFAP04085 211 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 ITGB6P18564 788 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 TFEBP19484 476 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 CRHBPP24387 322 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 IL1R2P27930 398 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 AXLP30530 894 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 OXTRP30559 389 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 IL12RB1P42701 662 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 CRADDP78560 199 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 SPIRE1Q08AE8 756 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 TOP3AQ13472 1001 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 RFTN1Q14699 578 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 PM20D1Q6GTS8 502 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 CLEC10AQ8IUN9 316 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 CPA6Q8N4T0 437 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 GALNT11Q8NCW6 608 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 SLAIN1Q8ND83 568 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 APBB2Q92870 758 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 RPL3LQ92901 407 aaKnown RBP12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 GATA5Q9BWX5 397 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 DHX35Q9H5Z1 703 aaKnown RBP12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 ERVMER34-1Q9H9K5 563 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 XPNPEP3Q9NQH7 507 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 CCM2LQ9NUG4 571 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 TRMT13Q9NUP7 481 aaKnown RBP12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 EXD2Q9NVH0 621 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 GAKO14976 1311 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 TEX51A0A1B0GUA7 166 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 SLC15A5A6NIM6 579 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 LEUTXA8MZ59 168 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 ARHGEF9O43307 516 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 PPP1R11O60927 126 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 ZNF254O75437 659 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 LTFP02788 710 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 DEFA1P59665 94 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 DEFA3P59666 94 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 TRAP1Q12931 704 aaKnown RBP12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 INPP5AQ14642 412 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 COL19A1Q14993 1142 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 CA9Q16790 459 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 DPY19L1Q2PZI1 675 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 KRT39Q6A163 491 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 BNIPLQ7Z465 357 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 IFNL1Q8IU54 200 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 PHC2Q8IXK0 858 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 TBC1D21Q8IYX1 336 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 MARC2Q969Z3 335 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms