RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 IFNKQ9P0W0 207 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 APOBEC3BQ9UH17 382 aaKnown RBP12.84□□□□□ -0.35
PTPRF-214ENST00000496043 ATP8A1Q9Y2Q0 1164 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 COQ6Q9Y2Z9 468 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.84□□□□□ -0.35
PTPRF-214ENST00000496043 TP53BP1Q12888 1972 aaPredicted RBP12.83□□□□□ -0.35
PTPRF-214ENST00000496043 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.83□□□□□ -0.36
PTPRF-214ENST00000496043 A0A1W2PQ67 120 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 CPED1A4D0V7 1026 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 TPM3P06753 285 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 ANXA6P08133 673 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 C6P13671 934 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 TCF4P15884 667 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 SSR1P43307 286 aaKnown RBP12.83□□□□□ -0.36
PTPRF-214ENST00000496043 RPIAP49247 311 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 AP1S1P61966 158 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 SEMG2Q02383 582 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 SLC10A7Q0GE19 358 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 C1orf61Q13536 156 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 INPP5AQ14642 412 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 IRF4Q15306 451 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 HADHQ16836 314 aaKnown RBP12.83□□□□□ -0.36
PTPRF-214ENST00000496043 SKOR2Q2VWA4 1001 aaPredicted RBP12.83□□□□□ -0.36
PTPRF-214ENST00000496043 DEFB133Q30KQ1 61 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 PRRT3Q5FWE3 981 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 ENPP7Q6UWV6 458 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 MACC1Q6ZN28 852 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 ZSWIM9Q86XI8 627 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 TP53INP2Q8IXH6 220 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 BBS5Q8N3I7 341 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 ATL2Q8NHH9 583 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 NSMCE1Q8WV22 266 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 SCG3Q8WXD2 468 aaKnown RBP12.83□□□□□ -0.36
PTPRF-214ENST00000496043 ECHDC3Q96DC8 303 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 BTBD6Q96KE9 485 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 CSPG4P5Q96PW8 444 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 TCEAL2Q9H3H9 227 aaPredicted RBP12.83□□□□□ -0.36
PTPRF-214ENST00000496043 SCUBE2Q9NQ36 999 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.83□□□□□ -0.36
PTPRF-214ENST00000496043 ETNK2Q9NVF9 386 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 ANAPC7Q9UJX3 599 aa12.83□□□□□ -0.36
PTPRF-214ENST00000496043 TDRD6O60522 2096 aaKnown RBP12.82□□□□□ -0.36
PTPRF-214ENST00000496043 LY6G6EA0A0G2JKS1 128 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 EME2A4GXA9 379 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-214ENST00000496043 LMO7DNF2Z398 122 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 TRAFD1O14545 582 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-214ENST00000496043 MUSKO15146 869 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 YY2O15391 372 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 GCATO75600 419 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 PRKCGP05129 697 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 CTSEP14091 401 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 CASP14P31944 242 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 SERPINB6P35237 376 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 HSPA9P38646 679 aaKnown RBP12.82□□□□□ -0.36
PTPRF-214ENST00000496043 MMP12P39900 470 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 KRT81Q14533 505 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 ZNF235Q14590 738 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 ELOCQ15369 112 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 NR0B2Q15466 257 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 CDKN3Q16667 212 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 COL28A1Q2UY09 1125 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 CDCP2Q5VXM1 449 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 LIPIQ6XZB0 460 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 LRRC49Q8IUZ0 686 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 HID1Q8IV36 788 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 RBFAQ8N0V3 343 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 SDR16C5Q8N3Y7 309 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 FSTL5Q8N475 847 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-214ENST00000496043 TPCN2Q8NHX9 752 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 IFI44Q8TCB0 444 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 MAPK15Q8TD08 544 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 TSACCQ96A04 125 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-214ENST00000496043 DEPDC7Q96QD5 511 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 PCDH18Q9HCL0 1135 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 DOLKQ9UPQ8 538 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 U3KQA8 63 aa12.82□□□□□ -0.36
PTPRF-214ENST00000496043 URB1O60287 2271 aaKnown RBP12.82□□□□□ -0.36
PTPRF-214ENST00000496043 A0A087WV48 116 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 MAFKO60675 156 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 RECQL5O94762 991 aaPredicted RBP12.81□□□□□ -0.36
PTPRF-214ENST00000496043 RASGRP1O95267 797 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 TNFP01375 233 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 GYPCP04921 128 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 PCCBP05166 539 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 ALPIP09923 528 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 TSHRP16473 764 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 NFKBIAP25963 317 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 HNRNPH3P31942 346 aaKnown RBP12.81□□□□□ -0.36
PTPRF-214ENST00000496043 HK3P52790 923 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 CDH6P55285 790 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 SRP54P61011 504 aaKnown RBP12.81□□□□□ -0.36
PTPRF-214ENST00000496043 MTM1Q13496 603 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 NFATC4Q14934 902 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 TSR1Q2NL82 804 aaKnown RBP12.81□□□□□ -0.36
PTPRF-214ENST00000496043 ZSCAN23Q3MJ62 389 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 MARC1Q5VT66 337 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 TXNRD3NBQ6F5E7 133 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 ESRP1Q6NXG1 681 aaKnown RBP12.81□□□□□ -0.36
PTPRF-214ENST00000496043 LVRNQ6Q4G3 990 aa12.81□□□□□ -0.36
PTPRF-214ENST00000496043 LRRC69Q6ZNQ3 347 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms