RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 LRRC4CQ9HCJ2 640 aa14.37□□□□□ -0.11
PRPF40A-211ENST00000493468 TMPRSS4Q9NRS4 437 aa14.37□□□□□ -0.11
PRPF40A-211ENST00000493468 MFHAS1Q9Y4C4 1052 aa14.37□□□□□ -0.11
PRPF40A-211ENST00000493468 ITPR2Q14571 2701 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 ENO4A6NNW6 628 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 SMC2O95347 1197 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 GNA14O95837 355 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 TIMP2P16035 220 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 UGT1A3P35503 534 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 KIAA1024LP59773 190 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 NRG1Q02297 640 aaPredicted RBP14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 TRA2AQ13595 282 aaKnown RBP eCLIP14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 INPP5AQ14642 412 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 TTI2Q6NXR4 508 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 TAF8Q7Z7C8 310 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 IRF2BP1Q8IU81 584 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 CCDC112Q8NEF3 446 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 FAM46DQ8NEK8 389 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 HCAR2Q8TDS4 363 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 CASKIN2Q8WXE0 1202 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 JPH3Q8WXH2 748 aaPredicted RBP14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 SHC3Q92529 594 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 SLC45A3Q96JT2 553 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 MAGEH1Q9H213 219 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 HPCAL4Q9UM19 191 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 OR1A2Q9Y585 309 aa14.36□□□□□ -0.11
PRPF40A-211ENST00000493468 TSPAN11A1L157 253 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 ZSCAN5CA6NGD5 496 aaPredicted RBP14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 AGRPO00253 132 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 TNFRSF10CO14798 259 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 ZW10O43264 779 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 FGF3P11487 239 aaPredicted RBP14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 ATXN7L2Q5T6C5 722 aaPredicted RBP14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 MANEALQ5VSG8 457 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 KCTD16Q68DU8 428 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 SPECC1LQ69YQ0 1117 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 TRIM65Q6PJ69 517 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 NYAP1Q6ZVC0 841 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 NLRP14Q86W24 1093 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 ATCAYQ86WG3 371 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 C17orf82Q86X59 251 aaPredicted RBP14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 CACNA2D3Q8IZS8 1091 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 OR56A4Q8NGH8 313 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 KIAA1524Q8TCG1 905 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 OR1E3Q8WZA6 343 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 SMARCE1Q969G3 411 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 TTYH3Q9C0H2 523 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 RDH14Q9HBH5 336 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 DACH1Q9UI36 760 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 PLAAQ9Y263 795 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 COQ6Q9Y2Z9 468 aa14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.35□□□□□ -0.11
PRPF40A-211ENST00000493468 IGHV5-10-1A0A0J9YXX1 117 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 B4DGG1 531 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 B4GAT1O43505 415 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 TMCC1O94876 653 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 IGSF6O95976 241 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 HOXC4P09017 264 aaPredicted RBP14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 RHOQP17081 205 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 ITIH2P19823 946 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 KELP23276 732 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 USP8P40818 1118 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 GABRB2P47870 512 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 RNASE9P60153 205 aaKnown RBP14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 PTK2Q05397 1052 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 LACTB2Q53H82 288 aaPredicted RBP14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 SFTPA2Q8IWL1 248 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 FMR1NBQ8N0W7 255 aaPredicted RBP14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 AGBL5Q8NDL9 886 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 PMEPA1Q969W9 287 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 CCDC74BQ96LY2 380 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 NUDT22Q9BRQ3 303 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 EFHD1Q9BUP0 239 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 ASPSCR1Q9BZE9 553 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 DPEP2Q9H4A9 486 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 FGF22Q9HCT0 170 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 ZNF71Q9NQZ8 489 aaPredicted RBP14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 NDFIP2Q9NV92 336 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 TMEM248Q9NWD8 314 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 PLEKHB1Q9UF11 243 aaPredicted RBP14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 B3GALT1Q9Y5Z6 326 aa14.34□□□□□ -0.11
PRPF40A-211ENST00000493468 RP1L1Q8IWN7 2480 aaPredicted RBP14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 BICDL2A1A5D9 508 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 CFAP69A5D8W1 941 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 CACNB4O00305 520 aaPredicted RBP14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 KDELR3O43731 214 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 RAD1O60671 282 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 RAMP2O60895 175 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 CD44P16070 742 aaKnown RBP14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 XPAP23025 273 aaPredicted RBP14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 CDH5P33151 784 aaPredicted RBP14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 KRT9P35527 623 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 GPR3P46089 330 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 LIMK2P53671 638 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 RAB15P59190 212 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 CDC20Q12834 499 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 KLRB1Q12918 225 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 SQSTM1Q13501 440 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 ARHGAP44Q17R89 818 aa14.33□□□□□ -0.12
PRPF40A-211ENST00000493468 TSR1Q2NL82 804 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms