RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 ACTRT2Q8TDY3 377 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 NCKIPSDQ9NZQ3 722 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 RAMP2O60895 175 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 LUC7L3O95232 432 aaKnown RBP12.52□□□□□ -0.41
HMGN1-220ENST00000492280 ZNF135P52742 658 aaPredicted RBP12.52□□□□□ -0.41
HMGN1-220ENST00000492280 RPS24P62847 133 aaKnown RBP12.52□□□□□ -0.41
HMGN1-220ENST00000492280 PRKAA1Q13131 559 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 TRIP10Q15642 601 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 PGM2L1Q6PCE3 622 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 DHDDSQ86SQ9 333 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 DCP1BQ8IZD4 617 aaKnown RBP12.52□□□□□ -0.41
HMGN1-220ENST00000492280 DSELQ8IZU8 1212 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 DBF4BQ8NFT6 615 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 BCL7CQ8WUZ0 217 aaPredicted RBP12.52□□□□□ -0.41
HMGN1-220ENST00000492280 GLT1D1Q96MS3 346 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 UROC1Q96N76 676 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 SPON2Q9BUD6 331 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 UBE2OQ9C0C9 1292 aaKnown RBP12.52□□□□□ -0.41
HMGN1-220ENST00000492280 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.52□□□□□ -0.41
HMGN1-220ENST00000492280 SORCS3Q9UPU3 1222 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 ANKRD6Q9Y2G4 727 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 LRCH1Q9Y2L9 728 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 HEATR9A2RTY3 570 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 MTMR11A4FU01 709 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 CCNT2O60583 730 aaKnown RBP12.52□□□□□ -0.41
HMGN1-220ENST00000492280 TLR5O60602 858 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 OAZ2O95190 189 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 GJB5O95377 273 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 ATXN1LP0C7T5 689 aaKnown RBP12.52□□□□□ -0.41
HMGN1-220ENST00000492280 IRF1P10914 325 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 PAMP19021 973 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 SLC6A4P31645 630 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 TM4SF4P48230 202 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 SGSHP51688 502 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 MSLNQ13421 630 aaPredicted RBP12.52□□□□□ -0.41
HMGN1-220ENST00000492280 FRG1Q14331 258 aaKnown RBP12.52□□□□□ -0.41
HMGN1-220ENST00000492280 FSCBQ5H9T9 825 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 TECRLQ5HYJ1 363 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 CILP2Q8IUL8 1156 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 KLHDC8BQ8IXV7 354 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 ABI1Q8IZP0 508 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 LGI2Q8N0V4 545 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 SCML4Q8N228 414 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 UMODL1-AS1Q8N2C9 162 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 FBXW8Q8N3Y1 598 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 CD99L2Q8TCZ2 262 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 PTERQ96BW5 349 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 ECSITQ9BQ95 431 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 PIDD1Q9HB75 910 aa12.52□□□□□ -0.41
HMGN1-220ENST00000492280 CCDC189A1A4V9 331 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 SDHDO14521 159 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 SKIP12755 728 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 PPARGP37231 505 aaPredicted RBP12.51□□□□□ -0.41
HMGN1-220ENST00000492280 SLC11A1P49279 550 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 RENBPP51606 427 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 MS4A2Q01362 244 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 DSG1Q02413 1049 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 RALGDSQ12967 914 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 HNRNPDQ14103 355 aaKnown RBP12.51□□□□□ -0.41
HMGN1-220ENST00000492280 ACAD11Q709F0 780 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 HMGCLL1Q8TB92 370 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 SLC39A3Q9BRY0 314 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 MARCH5Q9NX47 278 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 NSMCE4AQ9NXX6 385 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 PLXNA3P51805 1871 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 UBFD1O14562 309 aaKnown RBP12.51□□□□□ -0.41
HMGN1-220ENST00000492280 PSMD3O43242 534 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 TSPAN3O60637 253 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 NBNO60934 754 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 TRPA1O75762 1119 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 GOT2P00505 430 aaKnown RBP12.51□□□□□ -0.41
HMGN1-220ENST00000492280 RHOQP17081 205 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 ATF6P18850 670 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 SP100P23497 879 aaPredicted RBP12.51□□□□□ -0.41
HMGN1-220ENST00000492280 CDKN1CP49918 316 aaPredicted RBP12.51□□□□□ -0.41
HMGN1-220ENST00000492280 BTKQ06187 659 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 CEACAM7Q14002 265 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 CYLC2Q14093 348 aaPredicted RBP12.51□□□□□ -0.41
HMGN1-220ENST00000492280 GRAMD1BQ3KR37 738 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 GDPD5Q8WTR4 605 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 SCLYQ96I15 445 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 NSUN5Q96P11 429 aaKnown RBP12.51□□□□□ -0.41
HMGN1-220ENST00000492280 KCNA7Q96RP8 456 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 TRIM62Q9BVG3 475 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 VPS45Q9NRW7 570 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 TMEM248Q9NWD8 314 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 CLIC5Q9NZA1 410 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 CCDC167Q9P0B6 97 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 FAM50BQ9Y247 325 aa12.51□□□□□ -0.41
HMGN1-220ENST00000492280 ANKRD36A6QL64 1941 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 A0A1B0GTL3 188 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 UBA6A0AVT1 1052 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 TXNDC9O14530 226 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 LDB2O43679 373 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 RNASEH1O60930 286 aaKnown RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 SUPT7LO94864 414 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 MTTPP55157 894 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 ZNF235Q14590 738 aa12.5□□□□□ -0.41
HMGN1-220ENST00000492280 LBRQ14739 615 aaKnown RBP12.5□□□□□ -0.41
HMGN1-220ENST00000492280 PITRM1Q5JRX3 1037 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms