RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 TMEM52BQ4KMG9 183 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 CERCAMQ5T4B2 595 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 FAM102AQ5T9C2 384 aaPredicted RBP8.28□□□□□ -1.08
USP39-216ENST00000490193 ISM2Q6H9L7 571 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 KLHL10Q6JEL2 608 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 TRNP1Q6NT89 227 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 GBP6Q6ZN66 633 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 SPRED1Q7Z699 444 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 TTC7BQ86TV6 843 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 VASH2Q86V25 355 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 NLRP14Q86W24 1093 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 XYLT1Q86Y38 959 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 HID1Q8IV36 788 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 DRC7Q8IY82 874 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 ATL2Q8NHH9 583 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 CXorf40AQ8TE69 158 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 CASKIN2Q8WXE0 1202 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 CMKLR1Q99788 373 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 CRACR2AQ9BSW2 395 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 SLC12A9Q9BXP2 914 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 TTYH3Q9C0H2 523 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 MAGEH1Q9H213 219 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 NDFIP2Q9NV92 336 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 FOXJ2Q9P0K8 574 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 SIRPGQ9P1W8 387 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 SEPT3Q9UH03 358 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 TUBD1Q9UJT1 453 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 TMEM59LQ9UK28 342 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 NEU3Q9UQ49 428 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 CTNND2Q9UQB3 1225 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 PCDHB11Q9Y5F2 797 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 DGKBQ9Y6T7 804 aa8.28□□□□□ -1.08
USP39-216ENST00000490193 USP9XQ93008 2570 aaPredicted RBP8.28□□□□□ -1.08
USP39-216ENST00000490193 ARHGEF17Q96PE2 2063 aaPredicted RBP8.28□□□□□ -1.08
USP39-216ENST00000490193 TSPAN11A1L157 253 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 ZSCAN5CA6NGD5 496 aaPredicted RBP8.27□□□□□ -1.09
USP39-216ENST00000490193 NUDT21O43809 227 aaKnown RBP8.27□□□□□ -1.09
USP39-216ENST00000490193 FGFR1OPO95684 399 aaKnown RBP8.27□□□□□ -1.09
USP39-216ENST00000490193 GP1BBP13224 206 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 TIMP2P16035 220 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 RHOQP17081 205 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 PON1P27169 355 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 HTR1BP28222 390 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 RNASE9P60153 205 aaKnown RBP8.27□□□□□ -1.09
USP39-216ENST00000490193 SRP54P61011 504 aaKnown RBP8.27□□□□□ -1.09
USP39-216ENST00000490193 RAD51Q06609 339 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 ELP6Q0PNE2 266 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 PAK1Q13153 545 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 MTM1Q13496 603 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 UBAP2LQ14157 1087 aaKnown RBP8.27□□□□□ -1.09
USP39-216ENST00000490193 HLTFQ14527 1009 aaKnown RBP eCLIP8.27□□□□□ -1.09
USP39-216ENST00000490193 CLPPQ16740 277 aaPredicted RBP8.27□□□□□ -1.09
USP39-216ENST00000490193 EXOC3L4Q17RC7 722 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 C14orf28Q4W4Y0 310 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 INO80DQ53TQ3 878 aaPredicted RBP8.27□□□□□ -1.09
USP39-216ENST00000490193 SLC47A2Q86VL8 602 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 FAM131BQ86XD5 332 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 ZFAND4Q86XD8 727 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 FAM71AQ8IYT1 594 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 RYBPQ8N488 228 aaPredicted RBP8.27□□□□□ -1.09
USP39-216ENST00000490193 TMEM35BQ8NCS4 154 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 ZNF564Q8TBZ8 553 aaPredicted RBP8.27□□□□□ -1.09
USP39-216ENST00000490193 HCAR2Q8TDS4 363 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 USP7Q93009 1102 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 TSACCQ96A04 125 aaPredicted RBP8.27□□□□□ -1.09
USP39-216ENST00000490193 C18orf8Q96DM3 657 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 WDR92Q96MX6 357 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 GDAP1L1Q96MZ0 367 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 APOOQ9BUR5 198 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 PRR14Q9BWN1 585 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 SIX2Q9NPC8 291 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 TMEM248Q9NWD8 314 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 KLQ9UEF7 1012 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 AJAP1Q9UKB5 411 aaPredicted RBP8.27□□□□□ -1.09
USP39-216ENST00000490193 HPCAL4Q9UM19 191 aa8.27□□□□□ -1.09
USP39-216ENST00000490193 UTP20O75691 2785 aaKnown RBP8.26□□□□□ -1.09
USP39-216ENST00000490193 RNF223E7ERA6 249 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 STMND1H3BQB6 276 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 FOXN3O00409 490 aaPredicted RBP8.26□□□□□ -1.09
USP39-216ENST00000490193 HGSO14964 777 aaPredicted RBP8.26□□□□□ -1.09
USP39-216ENST00000490193 KDELR3O43731 214 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 RAMP2O60895 175 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 TMCC1O94876 653 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 LSM8O95777 96 aaKnown RBP8.26□□□□□ -1.09
USP39-216ENST00000490193 IGSF6O95976 241 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 TNFP01375 233 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 ITIH2P19823 946 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 CR2P20023 1033 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 ADRA1BP35368 520 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 STX17P56962 302 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 KIAA1024LP59773 190 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 BPIFB4P59827 614 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 COPS2P61201 443 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 CYP4F2P78329 520 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 APBA1Q02410 837 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 INPP5AQ14642 412 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 NR1D2Q14995 579 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 C16orf72Q14CZ0 275 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 LRRC73Q5JTD7 316 aa8.26□□□□□ -1.09
USP39-216ENST00000490193 ATXN7L2Q5T6C5 722 aaPredicted RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms