RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 IRF4Q15306 451 aa25.17■■□□□ 1.62
HMGN1-217ENST00000489072 SMAD1Q15797 465 aaKnown RBP25.17■■□□□ 1.62
HMGN1-217ENST00000489072 NCBP2-AS2Q69YL0 99 aa25.17■■□□□ 1.62
HMGN1-217ENST00000489072 CNGA4Q8IV77 575 aa25.17■■□□□ 1.62
HMGN1-217ENST00000489072 KCTD6Q8NC69 237 aa25.17■■□□□ 1.62
HMGN1-217ENST00000489072 OR4C6Q8NH72 309 aa25.17■■□□□ 1.62
HMGN1-217ENST00000489072 SLC35G2Q8TBE7 412 aa25.17■■□□□ 1.62
HMGN1-217ENST00000489072 C1QTNF7Q9BXJ2 289 aa25.17■■□□□ 1.62
HMGN1-217ENST00000489072 FFAR2O15552 330 aa25.16■■□□□ 1.62
HMGN1-217ENST00000489072 RFPL3O75679 317 aa25.16■■□□□ 1.62
HMGN1-217ENST00000489072 RALGDSQ12967 914 aa25.16■■□□□ 1.62
HMGN1-217ENST00000489072 ZNF211Q13398 564 aaPredicted RBP25.16■■□□□ 1.62
HMGN1-217ENST00000489072 MESDQ14696 234 aa25.16■■□□□ 1.62
HMGN1-217ENST00000489072 PAFAH1B3Q15102 231 aaKnown RBP25.16■■□□□ 1.62
HMGN1-217ENST00000489072 WSCD2Q2TBF2 565 aa25.16■■□□□ 1.62
HMGN1-217ENST00000489072 ANKRD20A8PQ5CZ79 823 aa25.16■■□□□ 1.62
HMGN1-217ENST00000489072 NUDCD1Q96RS6 583 aa25.16■■□□□ 1.62
HMGN1-217ENST00000489072 MGME1Q9BQP7 344 aa25.16■■□□□ 1.62
HMGN1-217ENST00000489072 ZNF670Q9BS34 389 aa25.16■■□□□ 1.62
HMGN1-217ENST00000489072 LCMT1Q9UIC8 334 aa25.16■■□□□ 1.62
HMGN1-217ENST00000489072 ZMIZ1Q9ULJ6 1067 aa25.16■■□□□ 1.62
HMGN1-217ENST00000489072 PNMA8BQ9ULN7 279 aaPredicted RBP25.16■■□□□ 1.62
HMGN1-217ENST00000489072 TMEM8BA6NDV4 472 aa25.15■■□□□ 1.62
HMGN1-217ENST00000489072 KRT7P08729 469 aa25.15■■□□□ 1.62
HMGN1-217ENST00000489072 CKMT2P17540 419 aa25.15■■□□□ 1.62
HMGN1-217ENST00000489072 HSPA9P38646 679 aaKnown RBP25.15■■□□□ 1.62
HMGN1-217ENST00000489072 CLDN6P56747 220 aa25.15■■□□□ 1.62
HMGN1-217ENST00000489072 MAXP61244 160 aa25.15■■□□□ 1.62
HMGN1-217ENST00000489072 HNRNPKP61978 463 aaKnown RBP eCLIP25.15■■□□□ 1.62
HMGN1-217ENST00000489072 PDK2Q15119 407 aa25.15■■□□□ 1.62
HMGN1-217ENST00000489072 ZNF548Q8NEK5 533 aaPredicted RBP25.15■■□□□ 1.62
HMGN1-217ENST00000489072 FAF2Q96CS3 445 aa25.15■■□□□ 1.62
HMGN1-217ENST00000489072 TRIM5Q9C035 493 aa25.15■■□□□ 1.62
HMGN1-217ENST00000489072 NOD2Q9HC29 1040 aa25.15■■□□□ 1.62
HMGN1-217ENST00000489072 PCDHGC4Q9Y5F7 938 aa25.15■■□□□ 1.62
HMGN1-217ENST00000489072 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP25.14■■□□□ 1.62
HMGN1-217ENST00000489072 FAM149AA5PLN7 773 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 HTRA2O43464 458 aaPredicted RBP25.14■■□□□ 1.62
HMGN1-217ENST00000489072 KRT37O76014 449 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 NEBLO76041 1014 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 MTA2O94776 668 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 MAP3K6O95382 1288 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 CAPNS1P04632 268 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 C1SP09871 688 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 MMP13P45452 471 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 YPEL5P62699 121 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 GALNT2Q10471 571 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 LRRC14Q15048 493 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 AGERQ15109 404 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 MARC1Q5VT66 337 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 GALNT15Q8N3T1 639 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 PQLC3Q8N755 202 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 ZCCHC14Q8WYQ9 949 aaKnown RBP25.14■■□□□ 1.62
HMGN1-217ENST00000489072 RAPGEF5Q92565 580 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 SCUBE2Q9NQ36 999 aa25.14■■□□□ 1.62
HMGN1-217ENST00000489072 PKD1L2Q7Z442 2459 aa25.14■■□□□ 1.61
HMGN1-217ENST00000489072 APC2O95996 2303 aa25.14■■□□□ 1.61
HMGN1-217ENST00000489072 MYLKQ15746 1914 aa25.14■■□□□ 1.61
HMGN1-217ENST00000489072 SCAMP1O15126 338 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 JUNDP17535 347 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 GARSP41250 739 aaKnown RBP25.13■■□□□ 1.61
HMGN1-217ENST00000489072 THOP1P52888 689 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 DPPA4Q7L190 304 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 LRRC49Q8IUZ0 686 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 RBFAQ8N0V3 343 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 TEX26Q8N6G2 289 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 PAF1Q8N7H5 531 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 TC2NQ8N9U0 490 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 NSMCE1Q8WV22 266 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 SPOCK2Q92563 424 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 TCEAL2Q9H3H9 227 aaPredicted RBP25.13■■□□□ 1.61
HMGN1-217ENST00000489072 NLGN3Q9NZ94 848 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 LRP4O75096 1905 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 ACACAQ13085 2346 aa25.13■■□□□ 1.61
HMGN1-217ENST00000489072 CHD6Q8TD26 2715 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 CFAP47Q6ZTR5 3102 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 H3BM21 787 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 LZTS3O60299 673 aaPredicted RBP25.12■■□□□ 1.61
HMGN1-217ENST00000489072 SOCS5O75159 536 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 GM2AP17900 193 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 KDELR1P24390 212 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 ACP1P24666 158 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 POLR2LP62875 67 aaKnown RBP25.12■■□□□ 1.61
HMGN1-217ENST00000489072 TRAF2Q12933 501 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 PTK2BQ14289 1009 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 LIPIQ6XZB0 460 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 MACC1Q6ZN28 852 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 MAP7D3Q8IWC1 876 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 RHOT2Q8IXI1 618 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 BBS5Q8N3I7 341 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 RFFLQ8WZ73 363 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 NT5MQ9NPB1 228 aa25.12■■□□□ 1.61
HMGN1-217ENST00000489072 DSPP15924 2871 aaKnown RBP25.12■■□□□ 1.61
HMGN1-217ENST00000489072 ASXL3Q9C0F0 2248 aa25.11■■□□□ 1.61
HMGN1-217ENST00000489072 LY6G6EA0A0G2JKS1 128 aa25.11■■□□□ 1.61
HMGN1-217ENST00000489072 CFAP69A5D8W1 941 aa25.11■■□□□ 1.61
HMGN1-217ENST00000489072 A8MX80 341 aa25.11■■□□□ 1.61
HMGN1-217ENST00000489072 K7ESM1 405 aa25.11■■□□□ 1.61
HMGN1-217ENST00000489072 TOR1BO14657 336 aa25.11■■□□□ 1.61
HMGN1-217ENST00000489072 MYF5P13349 255 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms