RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 KRT14P02533 472 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 ITGB7P26010 798 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 CD68P34810 354 aaPredicted RBP10.38□□□□□ -0.75
SKA1-204ENST00000488454 FDFT1P37268 417 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 FNTBP49356 437 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 TPMTP51580 245 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 SUOXP51687 545 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 NEK3P51956 506 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 GDF10P55107 478 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 MPP3Q13368 585 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 PCSK7Q16549 785 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 ZNF528Q3MIS6 628 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 ERAP2Q6P179 960 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 TTC27Q6P3X3 843 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 USP30Q70CQ3 517 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 ERN2Q76MJ5 926 aaKnown RBP10.38□□□□□ -0.75
SKA1-204ENST00000488454 MAATS1Q7Z4T9 603 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 FAM124AQ86V42 546 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 WDR5BQ86VZ2 330 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 SPATA22Q8NHS9 363 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 CCHCR1Q8TD31 782 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 RAB7BQ96AH8 199 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 ZNF419Q96HQ0 510 aaPredicted RBP10.38□□□□□ -0.75
SKA1-204ENST00000488454 FSD1LQ9BXM9 530 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 HDAC8Q9BY41 377 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 BTBD1Q9H0C5 482 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 DDX47Q9H0S4 455 aaKnown RBP10.38□□□□□ -0.75
SKA1-204ENST00000488454 NEUROG2Q9H2A3 272 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 RAB6BQ9NRW1 208 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 VPS45Q9NRW7 570 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 UBP1Q9NZI7 540 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 DKK3Q9UBP4 350 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 PCDHB9Q9Y5E1 797 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 ATG2BQ96BY7 2078 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 F5H423 210 aaPredicted RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 NEMP1O14524 444 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 SLC7A4O43246 635 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 HTRA2O43464 458 aaPredicted RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 PGLSO95336 258 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 MT-CYBP00156 380 aaPredicted RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 CPP00450 1065 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 ZSCAN5DPP0CG00 497 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 SP9P0CG40 484 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 ETS1P14921 441 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 PSMB4P28070 264 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 CD6P30203 668 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 CNR2P34972 360 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 RPL22P35268 128 aaKnown RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 P2RY2P41231 377 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 WNT3AP56704 352 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 RPL26P61254 145 aaKnown RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 DR1Q01658 176 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 CDK18Q07002 472 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 CNTN1Q12860 1018 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 TRIP13Q15645 432 aaPredicted RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 SLC14A2Q15849 920 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 FAM182AQ5T1J6 154 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 SLC36A4Q6YBV0 504 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 SYDE1Q6ZW31 735 aaPredicted RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 KDELC2Q7Z4H8 507 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 PRPF39Q86UA1 669 aaKnown RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 C11orf74Q86VG3 221 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 MAML2Q8IZL2 1156 aaPredicted RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 TAB3Q8N5C8 712 aaPredicted RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 AADATQ8N5Z0 425 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 CEP112Q8N8E3 955 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 OR14C36Q8NHC7 312 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 RLN3Q8WXF3 142 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 ARRDC3Q96B67 414 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 RMDN1Q96DB5 314 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 KRT12Q99456 494 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 C1QTNF2Q9BXJ5 285 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 IRF2BPLQ9H1B7 796 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 SGK2Q9HBY8 427 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 PCDH9Q9HC56 1237 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 ZSCAN32Q9NX65 697 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 USP36Q9P275 1121 aaKnown RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 PCYOX1Q9UHG3 505 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 FZD4Q9ULV1 537 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 PHTF1Q9UMS5 762 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 CYP8B1Q9UNU6 501 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 RPL26L1Q9UNX3 145 aaKnown RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 CHKBQ9Y259 395 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 MRFAP1Q9Y605 127 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 CHD5Q8TDI0 1954 aa10.37□□□□□ -0.75
SKA1-204ENST00000488454 MYO18AQ92614 2054 aaKnown RBP10.37□□□□□ -0.75
SKA1-204ENST00000488454 NYNRINQ9P2P1 1898 aaKnown RBP10.36□□□□□ -0.75
SKA1-204ENST00000488454 TBC1D3DA0A087WVF3 549 aa10.36□□□□□ -0.75
SKA1-204ENST00000488454 TBC1D3IA0A087WXS9 549 aa10.36□□□□□ -0.75
SKA1-204ENST00000488454 TBC1D3EA0A087X179 549 aa10.36□□□□□ -0.75
SKA1-204ENST00000488454 TBC1D3KA0A087X1G2 549 aa10.36□□□□□ -0.75
SKA1-204ENST00000488454 CTAGE15A4D2H0 777 aa10.36□□□□□ -0.75
SKA1-204ENST00000488454 TBC1D3FA6NER0 549 aaPredicted RBP10.36□□□□□ -0.75
SKA1-204ENST00000488454 FAM47DPA6NHR8 397 aa10.36□□□□□ -0.75
SKA1-204ENST00000488454 LRRC72A6NJI9 287 aa10.36□□□□□ -0.75
SKA1-204ENST00000488454 UPK3BL1B0FP48 263 aa10.36□□□□□ -0.75
SKA1-204ENST00000488454 TBC1D3LB9A6J9 549 aa10.36□□□□□ -0.75
SKA1-204ENST00000488454 UPK3BL2E5RIL1 263 aa10.36□□□□□ -0.75
SKA1-204ENST00000488454 PLK4O00444 970 aa10.36□□□□□ -0.75
SKA1-204ENST00000488454 TRAFD1O14545 582 aaPredicted RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms