RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 IL31Q6EBC2 164 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 PRR23BQ6ZRT6 265 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 CATSPER4Q7RTX7 472 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 PIWIL4Q7Z3Z4 852 aaKnown RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 BRSK2Q8IWQ3 736 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 SYTL1Q8IYJ3 562 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 MICU2Q8IYU8 434 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ELMOD1Q8N336 334 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 LEMD2Q8NC56 503 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 BEST2Q8NFU1 509 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 OR9I1Q8NGQ6 314 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 PROX1Q92786 737 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 AKT1S1Q96B36 256 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 RTP4Q96DX8 246 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ELMO2Q96JJ3 720 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 MUS81Q96NY9 551 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 QKIQ96PU8 341 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 TBCBQ99426 244 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 C6orf62Q9GZU0 229 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-209ENST00000487188 PIF1Q9H611 641 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 ATP13A3Q9H7F0 1226 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 CNTN6Q9UQ52 1028 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 CDK5RAP2Q96SN8 1893 aa6.28□□□□□ -1.4
VPS13D-209ENST00000487188 EVPLLA8MZ36 301 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 CENPBD1B2RD01 187 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 H0Y858 1186 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 DYRK3O43781 588 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 C7P10643 843 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 ITIH1P19827 911 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 GABRB3P28472 473 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 ATICP31939 592 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 S100A5P33763 92 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 PTGER2P43116 358 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 CLK3P49761 638 aaKnown RBP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 SPP2Q13103 211 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 CA9Q16790 459 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 FAM83EQ2M2I3 478 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 UBE2UQ5VVX9 321 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 TMEM236Q5W0B7 351 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 TTC23Q5W5X9 447 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 HHIPL2Q6UWX4 724 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 B3GNT9Q6UX72 402 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 FAM183BPQ6ZVS7 135 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 NIPA1Q7RTP0 329 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 R3HCC1LQ7Z5L2 792 aaKnown RBP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 LINC00523Q86TU6 105 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 GATAD2AQ86YP4 633 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 SLC41A1Q8IVJ1 513 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 CMTR2Q8IYT2 770 aaKnown RBP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 TBC1D21Q8IYX1 336 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 SPATA6LQ8N4H0 392 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 ASCC1Q8N9N2 400 aaKnown RBP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 NETO2Q8NC67 525 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 MCFD2Q8NI22 146 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 SLC45A3Q96JT2 553 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 CNDP2Q96KP4 475 aaKnown RBP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 RHOBTB2Q9BYZ6 727 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 MUC3BQ9H195 1237 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 LHX5Q9H2C1 402 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 GMPR2Q9P2T1 348 aaKnown RBP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 KLQ9UEF7 1012 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 PDE10AQ9Y233 779 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 AFG3L2Q9Y4W6 797 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 LOXHD1Q8IVV2 1947 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 FAM172BPA6NC97 362 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 CENPXA8MT69 81 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 ARPC2O15144 300 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 TRIM24O15164 1050 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 RPS6KA4O75676 772 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 RFPL2O75678 378 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 BBOX1O75936 387 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 ALDH1A2O94788 518 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 TOMM70O94826 608 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 THRBP10828 461 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 MTHFD1P11586 935 aaKnown RBP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 IL12AP29459 219 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 CDH5P33151 784 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 HADHAP40939 763 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 NR2C2P49116 596 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 CCT8P50990 548 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 PLK1P53350 603 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 TGFB2P61812 414 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 KRR1Q13601 381 aaKnown RBP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 GRM3Q14832 879 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 SKIV2LQ15477 1246 aaKnown RBP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 UGP2Q16851 508 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 ZFP69Q49AA0 526 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 RAB6CQ53S08 254 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 WDR45BQ5MNZ6 344 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 TREML2Q5T2D2 321 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 TTC23LQ6PF05 361 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 CYS1Q717R9 158 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 HORMAD1Q86X24 394 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 EPHX4Q8IUS5 362 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 TRPV3Q8NET8 790 aa6.27□□□□□ -1.41
VPS13D-209ENST00000487188 PTCD2Q8WV60 388 aaKnown RBP6.27□□□□□ -1.41
VPS13D-209ENST00000487188 OMA1Q96E52 524 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms