RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	ITPRIPL1	Q6GPH6	555 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	FAM171B	Q6P995	826 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	RNF207	Q6ZRF8	634 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	RFPL4B	Q6ZWI9	263 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	USP51	Q70EK9	711 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	TAS2R42	Q7RTR8	314 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	PRPF39	Q86UA1	669 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	STK32C	Q86UX6	486 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CDR2L	Q86X02	465 aa	Predicted RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	HORMAD1	Q86X24	394 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CARM1	Q86X55	608 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	PALB2	Q86YC2	1186 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CLVS1	Q8IUQ0	354 aa	Predicted RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CHERP	Q8IWX8	916 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	KIAA2013	Q8IYS2	634 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	ANKRD13A	Q8IZ07	590 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	IFNL3	Q8IZI9	196 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	REXO1	Q8N1G1	1221 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	ZNF276	Q8N554	614 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	FAM26E	Q8N5C1	309 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	BANP	Q8N9N5	519 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	TXNDC5	Q8NBS9	432 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	LEMD2	Q8NC56	503 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	NETO2	Q8NC67	525 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	KIAA0895	Q8NCT3	520 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	EXD1	Q8NHP7	514 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	KBTBD7	Q8WVZ9	684 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	C18orf8	Q96DM3	657 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	DUS3L	Q96G46	650 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CDHR1	Q96JP9	859 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CNBD2	Q96M20	576 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	TWNK	Q96RR1	684 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	STRBP	Q96SI9	672 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	RTKN	Q9BST9	563 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	MCMBP	Q9BTE3	642 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	DHRS4	Q9BTZ2	278 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	TRAF4	Q9BUZ4	470 aa	Predicted RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	PACSIN1	Q9BY11	444 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	SEZ6L	Q9BYH1	1024 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	RHOBTB2	Q9BYZ6	727 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CLPB	Q9H078	707 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	RSPH9	Q9H1X1	276 aa	Predicted RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CXorf21	Q9HAI6	301 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	SYTL2	Q9HCH5	934 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	GINM1	Q9NU53	330 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	PPARGC1A	Q9UBK2	798 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	IPO11	Q9UI26	975 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	CDH22	Q9UJ99	828 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	GRID1	Q9ULK0	1009 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	SHOC2	Q9UQ13	582 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	POMP	Q9Y244	141 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	MRPL11	Q9Y3B7	192 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	SIT1	Q9Y3P8	196 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	SPEF1	Q9Y4P9	236 aa		4.77	□□□□□ -1.65
PTCD3-212	ENST00000477520	KDM3A	Q9Y4C1	1321 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	MYH6	P13533	1939 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	ARPC4-TTLL3	A0A0A6YYG9	625 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	PRSS51	A0A1B0GVH4	220 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	CLRN2	A0PK11	232 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	CAPN8	A6NHC0	703 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	hCG_1984214	I3L0E3	225 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	PDXK	O00764	312 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	GPR42	O15529	346 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	PDPK1	O15530	556 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	MSI1	O43347	362 aa	Known RBP	4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	SGTA	O43765	313 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	SPOP	O43791	374 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	MARCH6	O60337	910 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	DDN	O94850	711 aa	Predicted RBP	4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	MT-ND3	P03897	115 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	UGT2B4	P06133	528 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	S100A6	P06703	90 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	ENO1	P06733	434 aa	Known RBP	4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	C6orf222	P0C671	652 aa	Predicted RBP	4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	NAT2	P11245	290 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	GFAP	P14136	432 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	ENPP1	P22413	925 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	IL4R	P24394	825 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	PON1	P27169	355 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	PRDX5	P30044	214 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	GRK3	P35626	688 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	SLC16A2	P36021	539 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	NAMPT	P43490	491 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	LEPR	P48357	1165 aa	Known RBP	4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	RGS7	P49802	495 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	GMPS	P49915	693 aa	Predicted RBP	4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	PRELP	P51888	382 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	KPNA1	P52294	538 aa	Predicted RBP	4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	ZNF280A	P59817	542 aa	Predicted RBP	4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	DSTN	P60981	165 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	PHC1	P78364	1004 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	PPP2R2B	Q00005	443 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	COASY	Q13057	564 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	BAMBI	Q13145	260 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	ITGAD	Q13349	1161 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	CTTN	Q14247	550 aa	Known RBP	4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	NFE2L1	Q14494	772 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	SQLE	Q14534	574 aa		4.76	□□□□□ -1.65
PTCD3-212	ENST00000477520	RFTN1	Q14699	578 aa	Predicted RBP	4.76	□□□□□ -1.65

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