RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 TMCO4Q5TGY1 634 aa20.52■□□□□ 0.88
PDLIM4-206ENST00000474421 CYP4V2Q6ZWL3 525 aaPredicted RBP20.52■□□□□ 0.88
PDLIM4-206ENST00000474421 FSTL5Q8N475 847 aaPredicted RBP20.52■□□□□ 0.88
PDLIM4-206ENST00000474421 PAF1Q8N7H5 531 aa20.52■□□□□ 0.88
PDLIM4-206ENST00000474421 TSEN2Q8NCE0 465 aaKnown RBP20.52■□□□□ 0.88
PDLIM4-206ENST00000474421 SNIP1Q8TAD8 396 aaKnown RBP20.52■□□□□ 0.88
PDLIM4-206ENST00000474421 FGF11Q92914 225 aa20.52■□□□□ 0.88
PDLIM4-206ENST00000474421 IQCDQ96DY2 449 aa20.52■□□□□ 0.88
PDLIM4-206ENST00000474421 ZNF599Q96NL3 588 aa20.52■□□□□ 0.88
PDLIM4-206ENST00000474421 CWC15Q9P013 229 aaKnown RBP20.52■□□□□ 0.88
PDLIM4-206ENST00000474421 SEPT3Q9UH03 358 aa20.52■□□□□ 0.88
PDLIM4-206ENST00000474421 LZTS3O60299 673 aaPredicted RBP20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 BRINP1O60477 761 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 ANXA6P08133 673 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 MYF5P13349 255 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 EIF2S3P41091 472 aaKnown RBP20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 LIG3P49916 1009 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 AP1S1P61966 158 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 BCL2L1Q07817 233 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 PIGHQ14442 188 aaPredicted RBP20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 DPYSL2Q16555 572 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 CDKN3Q16667 212 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 WSCD2Q2TBF2 565 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 TDRD12Q587J7 1177 aaKnown RBP20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 RBFAQ8N0V3 343 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 NPWQ8N729 165 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 SCG3Q8WXD2 468 aaKnown RBP20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 NAT6Q93015 286 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 GRAMD1AQ96CP6 724 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 LRRC61Q9BV99 259 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 BOCQ9BWV1 1114 aa20.51■□□□□ 0.87
PDLIM4-206ENST00000474421 CPED1A4D0V7 1026 aa20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 EME2A4GXA9 379 aaPredicted RBP20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 RGRP47804 291 aa20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 ADKP55263 362 aaKnown RBP20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 ELOCQ15369 112 aa20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 C6orf132Q5T0Z8 1188 aa20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 EFL1Q7Z2Z2 1120 aaKnown RBP20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 LSMEM2Q8N112 164 aa20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 SDR16C5Q8N3Y7 309 aa20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 ECHDC3Q96DC8 303 aa20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 PSKH2Q96QS6 385 aa20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 TCEAL2Q9H3H9 227 aaPredicted RBP20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 DOLKQ9UPQ8 538 aa20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 COQ6Q9Y2Z9 468 aa20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 ATRXP46100 2492 aa20.5■□□□□ 0.87
PDLIM4-206ENST00000474421 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 A0A1W2PQ67 120 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 TLX3O43711 291 aaPredicted RBP20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 CSO75390 466 aaKnown RBP20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 GCATO75600 419 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 SERPING1P05155 500 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 ALPIP09923 528 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 TSHRP16473 764 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 HSPA9P38646 679 aaKnown RBP20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 SCNN1BP51168 640 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 HK3P52790 923 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 UBASH3AP57075 661 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 FANCCQ00597 558 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 MTM1Q13496 603 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 C1orf61Q13536 156 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 LBRQ14739 615 aaKnown RBP20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 NFATC4Q14934 902 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 TBC1D25Q3MII6 688 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 ESRP1Q6NXG1 681 aaKnown RBP20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 GUSBP11Q6P575 273 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 LVRNQ6Q4G3 990 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 TMCO3Q6UWJ1 677 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 BBS5Q8N3I7 341 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 WDR48Q8TAF3 677 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 APOOQ9BUR5 198 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 CBX8Q9HC52 389 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 PCDHB1Q9Y5F3 818 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 RP1P56715 2156 aa20.49■□□□□ 0.87
PDLIM4-206ENST00000474421 SYCE3A1L190 88 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 RASGRP1O95267 797 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 ELFN1P0C7U0 828 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 CTSEP14091 401 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 NFKBIAP25963 317 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 ZBED6P86452 979 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 ZNF235Q14590 738 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 INPP5AQ14642 412 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 HGSNATQ68CP4 663 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 ARHGAP36Q6ZRI8 547 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 POLNQ7Z5Q5 900 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 ZSWIM9Q86XI8 627 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 HID1Q8IV36 788 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 NIPA2Q8N8Q9 360 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 TEKT4Q8WW24 435 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 HSPH1Q92598 858 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 ZNF578Q96N58 590 aaPredicted RBP20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 IP6K2Q9UHH9 426 aa20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 PNMA8BQ9ULN7 279 aaPredicted RBP20.48■□□□□ 0.87
PDLIM4-206ENST00000474421 LOC400499M0QZD8 3231 aa20.47■□□□□ 0.87
PDLIM4-206ENST00000474421 GOLGA6L19H0YKK7 550 aa20.47■□□□□ 0.87
PDLIM4-206ENST00000474421 YY2O15391 372 aa20.47■□□□□ 0.87
PDLIM4-206ENST00000474421 USP12O75317 370 aa20.47■□□□□ 0.87
PDLIM4-206ENST00000474421 TCEA3O75764 348 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms