RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 H6PDO95479 791 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 ANXA5P08758 320 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 SSTR3P32745 418 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 SOX11P35716 441 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 GRIA4P48058 902 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 RGS1Q08116 209 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 LMBRD2Q68DH5 695 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF772Q68DY9 489 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 SULT1C3Q6IMI6 304 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 CITED4Q96RK1 184 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 LTN1O94822 1766 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 GSC2O15499 205 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 SLC22A3O75751 556 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 ZBTB6Q15916 424 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 TMEM86AQ8N2M4 240 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 DQX1Q8TE96 717 aaKnown RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 CENPNQ96H22 339 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 PTBP2Q9UKA9 531 aaKnown RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 FADS3Q9Y5Q0 445 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 LRRC14BA6NHZ5 514 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 H3BNH8 94 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 SERPINA3P01011 423 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 RPL9P32969 192 aaKnown RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 ZDHHC20Q5W0Z9 365 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 CLNKQ7Z7G1 428 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 ACE2Q9BYF1 805 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF638Q14966 1978 aaKnown RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 CRB1P82279 1406 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 PTPRUQ92729 1446 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 TFRCP02786 760 aaKnown RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 TARS2Q9BW92 718 aaKnown RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 POLD4Q9HCU8 107 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 PIM2Q9P1W9 311 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 CCNT2O60583 730 aaKnown RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 USF2Q15853 346 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 SLC9A4Q6AI14 798 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 GPRIN3Q6ZVF9 776 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 TRIM74Q86UV6 250 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 TRIM73Q86UV7 250 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 CAMKK1Q8N5S9 505 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 C12orf4Q9NQ89 552 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 UXTQ9UBK9 157 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 AKAP3O75969 853 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 VAPBO95292 243 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 LRG1P02750 347 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 TEAD4Q15561 434 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 FRMD7Q6ZUT3 714 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 CCDC24Q8N4L8 307 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 AKAP12Q02952 1782 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 CASKO14936 926 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 ENTPD5O75356 428 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 JCHAINP01591 159 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 CATP04040 527 aaKnown RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 SSTR1P30872 391 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 SPP2Q13103 211 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 SNAPC2Q13487 334 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 TUBA1CQ9BQE3 449 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 TMEM109Q9BVC6 243 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 DENND2DQ9H6A0 471 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 DNAJC18Q9H819 358 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 PPRC1Q5VV67 1664 aaKnown RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 DISP2A7MBM2 1401 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 E2F8A0AVK6 867 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 MSH4O15457 936 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 DDX3YO15523 660 aaKnown RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 THP07101 528 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 HLA-DQA1Q5Y7H0 255 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 P2RY8Q86VZ1 359 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 C9orf43Q8TAL5 461 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 CREB3L1Q96BA8 519 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 SEMA6BQ9H3T3 888 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 MRTO4Q9UKD2 239 aaKnown RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 NUP50Q9UKX7 468 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 TRIM17Q9Y577 477 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 PDLIM1O00151 329 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF37AP17032 561 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 SLC18A1P54219 525 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 FBXO47Q5MNV8 452 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 RBM48Q5RL73 367 aaKnown RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 MRPS31Q92665 395 aaKnown RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 HTATIP2Q9BUP3 242 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 EHD4Q9H223 541 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 UGT2B17O75795 530 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 GNRH1P01148 92 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 PLCL1Q15111 1095 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 EPHA10Q5JZY3 1008 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 NEPROQ6NW34 567 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 PTCHD4Q6ZW05 846 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF420Q8TAQ5 688 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 KCTD15Q96SI1 283 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-209ENST00000472056 PI4K2AQ9BTU6 479 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 SLC22A4Q9H015 551 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 CST11Q9H112 138 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 PLA2G4CQ9UP65 541 aa13.37□□□□□ -0.27
COL6A3-209ENST00000472056 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.36□□□□□ -0.27
COL6A3-209ENST00000472056 MSL3P1P0C860 447 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 RPS12P25398 132 aaKnown RBP13.36□□□□□ -0.27
COL6A3-209ENST00000472056 PIK3CBP42338 1070 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 C6orf52Q5T4I8 152 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 FAM47BQ8NA70 645 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms