RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 WDFY2Q96P53 400 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 WDR41Q9HAD4 459 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 CHORDC1Q9UHD1 332 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 AGO2Q9UKV8 859 aaKnown RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 GOLGA8QA0A0J9YX86 632 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 GOLGA8OA6NCC3 632 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 GOLGA8NF8WBI6 632 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 KMOO15229 486 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 BCAS1O75363 584 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 CST3P01034 146 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ETS2P15036 469 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 UGT2B10P36537 528 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 NCOA4Q13772 614 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 IRF3Q14653 427 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 PCBP1Q15365 356 aaKnown RBP eCLIP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 FGD3Q5JSP0 725 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 SPANXN3Q5MJ09 141 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 PDPK2PQ6A1A2 396 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 NAPRTQ6XQN6 538 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 APOBEC3FQ8IUX4 373 aaKnown RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 LRRC49Q8IUZ0 686 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 RHEBL1Q8TAI7 183 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 YIPF6Q96EC8 236 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 SH3YL1Q96HL8 342 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 RNF170Q96K19 258 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 FBXO5Q9UKT4 447 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MAN2B2Q9Y2E5 1009 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ATP11BQ9Y2G3 1177 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 A0A075B6Q4 140 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 SERTM1A2A2V5 107 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 E7ENX8 843 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 UBXN8O00124 270 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 TAF4O00268 1085 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 PEX11BO96011 259 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ADRA1AP35348 466 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 YWHAHQ04917 246 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 NOL9Q5SY16 702 aaKnown RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ZNF668Q96K58 619 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CSPG4P5Q96PW8 444 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 PARK7Q99497 189 aaKnown RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 MCOLN1Q9GZU1 580 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 TNKS2Q9H2K2 1166 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 HEBP1Q9NRV9 189 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 GDAP2Q9NXN4 497 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 SNTG2Q9NY99 539 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 IL20Q9NYY1 176 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 TAF1P21675 1872 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 HLA-DQB1P01920 261 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ABCB1P08183 1280 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 MCF2P10911 925 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ACPPP15309 386 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 SLC1A6P48664 564 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 NDST1P52848 882 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ZNF280AP59817 542 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 MAPRE2Q15555 327 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 PYCR3Q53H96 274 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 LIPMQ5VYY2 423 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 PLPPR4Q7Z2D5 763 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 METTL23Q86XA0 190 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ACER1Q8TDN7 264 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CPA5Q8WXQ8 436 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 NECTIN3Q9NQS3 549 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 SNX15Q9NRS6 342 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 NCDNQ9UBB6 729 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 DKK3Q9UBP4 350 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CROTQ9UKG9 612 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 MED16Q9Y2X0 877 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CCL27Q9Y4X3 112 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 PI4K2BG5E9Z4 385 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 NME4O00746 187 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 HNRNPDLO14979 420 aaKnown RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 SUPT20HL2P0C7V6 817 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 FAM157BP0CG42 384 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ITGB7P26010 798 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 RBL1P28749 1068 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 GALK1P51570 392 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CDH13P55290 713 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 RAB41Q5JT25 222 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 DBX2Q6ZNG2 339 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 DCP1BQ8IZD4 617 aaKnown RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 SDR16C5Q8N3Y7 309 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 SNX31Q8N9S9 440 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 SPPL2BQ8TCT7 592 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 MMP19Q99542 508 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 KLF6Q99612 283 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ARHGAP39Q9C0H5 1083 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 MOV10Q9HCE1 1003 aaKnown RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 PNPOQ9NVS9 261 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 TSC2P49815 1807 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CLOCKO15516 846 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 CFLARO15519 480 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 SPRP35270 261 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ALDH18A1P54886 795 aaKnown RBP5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ART3Q13508 389 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 MICAQ29983 383 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 RGS21Q2M5E4 152 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 STYK1Q6J9G0 422 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 PRMT9Q6P2P2 845 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 ANGPTL8Q6UXH0 198 aa5.38□□□□□ -1.55
SYNE1-220ENST00000471834 DDX53Q86TM3 631 aaKnown RBP5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms