RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 EVA1BQ9NVM1 165 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 NCKIPSDQ9NZQ3 722 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 SPASTQ9UBP0 616 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 BZW2Q9Y6E2 419 aaKnown RBP16.43■□□□□ 0.22
COL9A3-208ENST00000469802 PTPRQQ9UMZ3 2332 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 KIF26BQ2KJY2 2108 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 CFAP69A5D8W1 941 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 LMO7DNF2Z398 122 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 H3BRJ5 948 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 TRAFD1O14545 582 aaPredicted RBP16.42■□□□□ 0.22
COL9A3-208ENST00000469802 PEX11BO96011 259 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 LIG3P49916 1009 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 PEX5P50542 639 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 AP1S1P61966 158 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 SLC25A11Q02978 314 aaKnown RBP16.42■□□□□ 0.22
COL9A3-208ENST00000469802 SMTNL2Q2TAL5 461 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 DEFB133Q30KQ1 61 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 TMCO4Q5TGY1 634 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 TXNRD3NBQ6F5E7 133 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 ERAP2Q6P179 960 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 POLNQ7Z5Q5 900 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 SNIP1Q8TAD8 396 aaKnown RBP16.42■□□□□ 0.22
COL9A3-208ENST00000469802 IFI44Q8TCB0 444 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 LMX1AQ8TE12 382 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 HNRNPLLQ8WVV9 542 aaKnown RBP16.42■□□□□ 0.22
COL9A3-208ENST00000469802 IQCDQ96DY2 449 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 ZNF599Q96NL3 588 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 CLPBQ9H078 707 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 THAP2Q9H0W7 228 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.42■□□□□ 0.22
COL9A3-208ENST00000469802 ETNK2Q9NVF9 386 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 NENFQ9UMX5 172 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 PCDHB1Q9Y5F3 818 aa16.42■□□□□ 0.22
COL9A3-208ENST00000469802 EME2A4GXA9 379 aaPredicted RBP16.41■□□□□ 0.22
COL9A3-208ENST00000469802 BRINP1O60477 761 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 PRKCGP05129 697 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 SERPING1P05155 500 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 RARAP10276 462 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 HOXB3P14651 431 aaPredicted RBP16.41■□□□□ 0.22
COL9A3-208ENST00000469802 CR2P20023 1033 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 EIF2S3P41091 472 aaKnown RBP16.41■□□□□ 0.22
COL9A3-208ENST00000469802 ZBED6P86452 979 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 SEMG2Q02383 582 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 SLC10A7Q0GE19 358 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 PIGHQ14442 188 aaPredicted RBP16.41■□□□□ 0.22
COL9A3-208ENST00000469802 LBRQ14739 615 aaKnown RBP16.41■□□□□ 0.22
COL9A3-208ENST00000469802 NFATC4Q14934 902 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 CDKN3Q16667 212 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 BOLA3Q53S33 107 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 PRRT3Q5FWE3 981 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 C6orf132Q5T0Z8 1188 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 CFAP58Q5T655 872 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 GUSBP11Q6P575 273 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 TEKT4Q8WW24 435 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 CSPG4P5Q96PW8 444 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 IL12RB2Q99665 862 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 SLC13A1Q9BZW2 595 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 SEPT3Q9UH03 358 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 CAPN11Q9UMQ6 739 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 AK5Q9Y6K8 562 aa16.41■□□□□ 0.22
COL9A3-208ENST00000469802 A0A087X0T9 212 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 TMEM110-MUSTN1A8MSY1 372 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 GYPCP04921 128 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 CYP1A2P05177 515 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 FAM228BP0C875 321 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 TSHRP16473 764 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 GM2AP17900 193 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 AMPD1P23109 780 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 ARL4AP40617 200 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 RENBPP51606 427 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 HK3P52790 923 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 UBASH3AP57075 661 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 TPM4P67936 248 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 PPARDQ03181 441 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 BCL2L1Q07817 233 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 MTM1Q13496 603 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 ALG11Q2TAA5 492 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 TMCO3Q6UWJ1 677 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 DPPA4Q7L190 304 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 SLC35F3Q8IY50 421 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 FSTL5Q8N475 847 aaPredicted RBP16.4■□□□□ 0.22
COL9A3-208ENST00000469802 DEPDC7Q96QD5 511 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 PCDH18Q9HCL0 1135 aa16.4■□□□□ 0.22
COL9A3-208ENST00000469802 ARHGEF17Q96PE2 2063 aaPredicted RBP16.39■□□□□ 0.21
COL9A3-208ENST00000469802 SCN8AQ9UQD0 1980 aa16.39■□□□□ 0.21
COL9A3-208ENST00000469802 YY2O15391 372 aa16.39■□□□□ 0.21
COL9A3-208ENST00000469802 HTRA2O43464 458 aaPredicted RBP16.39■□□□□ 0.21
COL9A3-208ENST00000469802 MAFKO60675 156 aa16.39■□□□□ 0.21
COL9A3-208ENST00000469802 SOCS5O75159 536 aa16.39■□□□□ 0.21
COL9A3-208ENST00000469802 CSO75390 466 aaKnown RBP16.39■□□□□ 0.21
COL9A3-208ENST00000469802 CELA2BP08218 269 aaPredicted RBP16.39■□□□□ 0.21
COL9A3-208ENST00000469802 TGM2P21980 687 aa16.39■□□□□ 0.21
COL9A3-208ENST00000469802 HSPA9P38646 679 aaKnown RBP16.39■□□□□ 0.21
COL9A3-208ENST00000469802 SCNN1BP51168 640 aa16.39■□□□□ 0.21
COL9A3-208ENST00000469802 BLKP51451 505 aa16.39■□□□□ 0.21
COL9A3-208ENST00000469802 ADKP55263 362 aaKnown RBP16.39■□□□□ 0.21
COL9A3-208ENST00000469802 C1orf61Q13536 156 aa16.39■□□□□ 0.21
COL9A3-208ENST00000469802 INPP5AQ14642 412 aa16.39■□□□□ 0.21
COL9A3-208ENST00000469802 NR0B2Q15466 257 aa16.39■□□□□ 0.21
COL9A3-208ENST00000469802 TBC1D25Q3MII6 688 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms