RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 EFL1Q7Z2Z2 1120 aaKnown RBP16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 CAMK1DQ8IU85 385 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 TSEN2Q8NCE0 465 aaKnown RBP16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 GLMNQ92990 594 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 ZNF653Q96CK0 615 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 TRIM11Q96F44 468 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 NAP1L5Q96NT1 182 aaPredicted RBP16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 LRRC61Q9BV99 259 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 ATP8A1Q9Y2Q0 1164 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 COL27A1Q8IZC6 1860 aaPredicted RBP16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 CPED1A4D0V7 1026 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 LRCH4O75427 683 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 ANXA6P08133 673 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 MYBL1P10243 752 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 SERPINA4P29622 427 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 MMP12P39900 470 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 BLKP51451 505 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 IL10RBQ08334 325 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 RFTN1Q14699 578 aaPredicted RBP16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 C6orf132Q5T0Z8 1188 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 CAVIN1Q6NZI2 390 aaKnown RBP16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 ZSWIM9Q86XI8 627 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 NPWQ8N729 165 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 TPCN2Q8NHX9 752 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 CINPQ9BW66 212 aaPredicted RBP16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 CLPBQ9H078 707 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 ATP13A3Q9H7F0 1226 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 SP110Q9HB58 689 aa16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 MRPL47Q9HD33 250 aaKnown RBP16.7■□□□□ 0.26
CCDC28B-204ENST00000469003 KALRNO60229 2985 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 LRP4O75096 1905 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 CFAP69A5D8W1 941 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 DFFAO00273 331 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 USP12O75317 370 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 SKILP12757 684 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 TSHRP16473 764 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 TGM2P21980 687 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 PCK1P35558 622 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 RPIAP49247 311 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 LIG3P49916 1009 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 NSUN2Q08J23 767 aaKnown RBP eCLIP16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 DPYSQ14117 519 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 NR1I3Q14994 352 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 IQCB1Q15051 598 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 FIGNQ5HY92 759 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 ARHGAP36Q6ZRI8 547 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 SLC35F3Q8IY50 421 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 LSMEM2Q8N112 164 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 FSTL5Q8N475 847 aaPredicted RBP16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 LZTR1Q8N653 840 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 NAT6Q93015 286 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 ECHDC3Q96DC8 303 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 ZNF578Q96N58 590 aaPredicted RBP16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 FUCA2Q9BTY2 467 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 APOOQ9BUR5 198 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 ISCUQ9H1K1 167 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 ZWILCHQ9H900 591 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 CWC15Q9P013 229 aaKnown RBP16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 MYO1AQ9UBC5 1043 aa16.69■□□□□ 0.26
CCDC28B-204ENST00000469003 SHROOM3Q8TF72 1996 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 YY2O15391 372 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 DXOO77932 396 aaKnown RBP16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 SERPINC1P01008 464 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 MPOP05164 745 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 HTR1BP28222 390 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 LSSP48449 732 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 HK3P52790 923 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 GABREP78334 506 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 BCL2L1Q07817 233 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 C19orf57Q0VDD7 668 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 MTM1Q13496 603 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 INPP5AQ14642 412 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 NFATC4Q14934 902 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 ELOCQ15369 112 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 ISXQ2M1V0 245 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 ALG11Q2TAA5 492 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 ENPP7Q6UWV6 458 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 HID1Q8IV36 788 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 ATL2Q8NHH9 583 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 GRAMD1AQ96CP6 724 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 ZNF599Q96NL3 588 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 PRORYQ9H606 182 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 POLR1BQ9H9Y6 1135 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 SEPT3Q9UH03 358 aa16.68■□□□□ 0.26
CCDC28B-204ENST00000469003 H3BRJ5 948 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 MUSKO15146 869 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 RASGRP1O95267 797 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 PRKCGP05129 697 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 ALPIP09923 528 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 CTSEP14091 401 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 RENBPP51606 427 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 AP1S1P61966 158 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 POLR2LP62875 67 aaKnown RBP16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 RALGDSQ12967 914 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 DPYSL2Q16555 572 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 BOLA3Q53S33 107 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 PERM1Q5SV97 790 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 TMCO4Q5TGY1 634 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 ESRP1Q6NXG1 681 aaKnown RBP16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 LVRNQ6Q4G3 990 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms