RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 DAPK2Q9UIK4 370 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 KLHL33A6NCF5 533 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 YJEFN3A6XGL0 299 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 RNF103O00237 685 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 GRM6O15303 877 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 SNRPAP09012 282 aaKnown RBP7.72□□□□□ -1.17
USP54-210ENST00000466048 FCGR1AP12314 374 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 KRT6CP48668 564 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 NR1H2P55055 460 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 BNC1Q01954 994 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 GRSF1Q12849 480 aaKnown RBP eCLIP7.72□□□□□ -1.17
USP54-210ENST00000466048 DPYSQ14117 519 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 C1orf53Q5VUE5 145 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 LVRNQ6Q4G3 990 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 ADGRD1Q6QNK2 874 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 PRPF39Q86UA1 669 aaKnown RBP7.72□□□□□ -1.17
USP54-210ENST00000466048 TRABD2AQ86V40 505 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.72□□□□□ -1.17
USP54-210ENST00000466048 COLGALT2Q8IYK4 626 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 TTC30BQ8N4P2 665 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 GLIS1Q8NBF1 620 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 OR6P1Q8NGX9 317 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 MDM1Q8TC05 714 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 TKTL2Q9H0I9 626 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 SMOC2Q9H3U7 446 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 TASP1Q9H6P5 420 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 POLMQ9NP87 494 aaPredicted RBP7.72□□□□□ -1.17
USP54-210ENST00000466048 ZDHHC7Q9NXF8 308 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 HEY2Q9UBP5 337 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 SCML2Q9UQR0 700 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 CARD8Q9Y2G2 431 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 USP3Q9Y6I4 520 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 SLC38A8A6NNN8 435 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 TP73O15350 636 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 GABBR2O75899 941 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 KITP10721 976 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 EN2P19622 333 aaPredicted RBP7.72□□□□□ -1.17
USP54-210ENST00000466048 GBE1Q04446 702 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 ARMC6Q6NXE6 501 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 CHRDL2Q6WN34 429 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 CYS1Q717R9 158 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 MICU2Q8IYU8 434 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 GALNT15Q8N3T1 639 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 ZCCHC7Q8N3Z6 543 aaKnown RBP7.72□□□□□ -1.17
USP54-210ENST00000466048 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.72□□□□□ -1.17
USP54-210ENST00000466048 DQX1Q8TE96 717 aaKnown RBP7.72□□□□□ -1.17
USP54-210ENST00000466048 EDEM1Q92611 657 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 GALNT8Q9NY28 637 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 OR12D3Q9UGF7 316 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 GRID1Q9ULK0 1009 aa7.72□□□□□ -1.17
USP54-210ENST00000466048 MEIS3P2A8K0S8 358 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 CTSAP10619 480 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 PGAM1P18669 254 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 ITGALP20701 1170 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 IFNA8P32881 189 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 NPY2RP49146 381 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 WDR5P61964 334 aaKnown RBP7.71□□□□□ -1.17
USP54-210ENST00000466048 CCDC157Q569K6 752 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 FNBP1LQ5T0N5 605 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 ANKRD22Q5VYY1 191 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 STX19Q8N4C7 294 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 MAB21L3Q8N8X9 362 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 ATAD1Q8NBU5 361 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 OR8D1Q8WZ84 308 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 TOP1MTQ969P6 601 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 ATP6V1E2Q96A05 226 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 WDR6Q9NNW5 1121 aaKnown RBP7.71□□□□□ -1.17
USP54-210ENST00000466048 PIGVQ9NUD9 493 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 MTMR10Q9NXD2 777 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 SORCS3Q9UPU3 1222 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 SLC27A5Q9Y2P5 690 aa7.71□□□□□ -1.17
USP54-210ENST00000466048 HHLA1C9JL84 531 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 MAN2B1O00754 1011 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 CCL16O15467 120 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 MFSD11O43934 449 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 NDUFS3O75489 264 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 ERCC2P18074 760 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 NRG1Q02297 640 aaPredicted RBP7.71□□□□□ -1.18
USP54-210ENST00000466048 DMC1Q14565 340 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 TRIP4Q15650 581 aaPredicted RBP7.71□□□□□ -1.18
USP54-210ENST00000466048 SPANXN3Q5MJ09 141 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 SYPL2Q5VXT5 272 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 RNF43Q68DV7 783 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 SERPINA13PQ6UXR4 307 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 TAS2R42Q7RTR8 314 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 C3orf58Q8NDZ4 430 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 CKAP2Q8WWK9 683 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 DGCR14Q96DF8 476 aaKnown RBP7.71□□□□□ -1.18
USP54-210ENST00000466048 SPACA7Q96KW9 195 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 EBNA1BP2Q99848 306 aaKnown RBP7.71□□□□□ -1.18
USP54-210ENST00000466048 PRKD2Q9BZL6 878 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 LRRC40Q9H9A6 602 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 AKAP7Q9P0M2 348 aaPredicted RBP7.71□□□□□ -1.18
USP54-210ENST00000466048 THSD7BQ9C0I4 1608 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 CBX4O00257 560 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 QSOX1O00391 747 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 BEST1O76090 585 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 SRP72O76094 671 aaKnown RBP7.71□□□□□ -1.18
USP54-210ENST00000466048 TMEM63AO94886 807 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 CAPN1P07384 714 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms