RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 C6orf163Q5TEZ5 329 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CIAPIN1Q6FI81 312 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PRR5LQ6MZQ0 368 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 WDR93Q6P2C0 686 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SCYL2Q6P3W7 929 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 DCLRE1AQ6PJP8 1040 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SLFN11Q7Z7L1 901 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PLD6Q8N2A8 252 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SLC43A2Q8N370 569 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 FAM133AQ8N9E0 248 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 FSIP1Q8NA03 581 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 STKLD1Q8NE28 680 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SPATA4Q8NEY3 305 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 GPR156Q8NFN8 814 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CELF1Q92879 486 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 AZIN2Q96A70 460 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 HAUS1Q96CS2 278 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SGF29Q96ES7 293 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 RRP36Q96EU6 259 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 MMP19Q99542 508 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PSD2Q9BQI7 771 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 TBC1D10AQ9BXI6 508 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 GPR61Q9BZJ8 451 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 NUP62CLQ9H1M0 184 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 KCNN2Q9H2S1 579 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 ZMAT3Q9HA38 289 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 GJB4Q9NTQ9 266 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 GULP1Q9UBP9 304 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 DNAJB4Q9UDY4 337 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PCDHA7Q9UN72 937 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 MAGED2Q9UNF1 606 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 NSFL1CQ9UNZ2 370 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 AURKCQ9UQB9 309 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 NIP7Q9Y221 180 aaKnown RBP eCLIP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 TIMM13Q9Y5L4 95 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PMF1-BGLAPU3KQ54 211 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PHLPP2Q6ZVD8 1323 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 RBBP6Q7Z6E9 1792 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 NUP98P52948 1817 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 TMEM120BA0PK00 339 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 PRSS38A1L453 326 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 XKRY2A2RUG3 117 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 FUOMA2VDF0 154 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 GSAPA4D1B5 854 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 RAB19A4D1S5 217 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 POM121BA6NF01 834 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 ARGFXA6NJG6 315 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 HTRA2O43464 458 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 BUB1BO60566 1050 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 BCAS2O75934 225 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 PGM3O95394 542 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 PLEKHA8P1O95397 391 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 SGPL1O95470 568 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 ANP32DO95626 131 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 NTSR2O95665 410 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 SYPP08247 313 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 ODC1P11926 461 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 PRG2P13727 222 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 GJA1P17302 382 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 GLRA2P23416 452 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 CD40P25942 277 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 NUP62P37198 522 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 MAGEA11P43364 429 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 LGALS4P56470 323 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 RAC3P60763 192 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 SRP54P61011 504 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 ATP8B2P98198 1209 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 KRT17Q04695 432 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 BFSP1Q12934 665 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 MYO1EQ12965 1108 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 DRP2Q13474 957 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 IL10RAQ13651 578 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 ADRM1Q16186 407 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 SUSD4Q5VX71 490 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 DENND2CQ68D51 928 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 TMTC3Q6ZXV5 915 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 USP43Q70EL4 1123 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 DIS3L2Q8IYB7 885 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 FUKQ8N0W3 1084 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 KRT78Q8N1N4 520 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 OXR1Q8N573 874 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 TMIEQ8NEW7 156 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 ZNF384Q8TF68 577 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 EDARADDQ8WWZ3 215 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 KAT5Q92993 513 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 RFKQ969G6 155 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 LENG1Q96BZ8 264 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 SPACA9Q96E40 222 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 CCDC43Q96MW1 224 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 TBC1D32Q96NH3 1257 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 FCRL4Q96PJ5 515 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 MED15Q96RN5 788 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 DUSP23Q9BVJ7 150 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 MRPL37Q9BZE1 423 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 SNTG1Q9NSN8 517 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 PKD2L2Q9NZM6 624 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 STX18Q9P2W9 335 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 ADD3Q9UEY8 706 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 CPA4Q9UI42 421 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 KCNH3Q9ULD8 1083 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms