RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 IFT43Q96FT9 208 aa11.66□□□□□ -0.54
SCN9A-204ENST00000452182 OMDQ99983 421 aa11.66□□□□□ -0.54
SCN9A-204ENST00000452182 ERP44Q9BS26 406 aa11.66□□□□□ -0.54
SCN9A-204ENST00000452182 FSD1LQ9BXM9 530 aa11.66□□□□□ -0.54
SCN9A-204ENST00000452182 ARNT2Q9HBZ2 717 aa11.66□□□□□ -0.54
SCN9A-204ENST00000452182 FBXL12Q9NXK8 326 aa11.66□□□□□ -0.54
SCN9A-204ENST00000452182 ASIC3Q9UHC3 531 aa11.66□□□□□ -0.54
SCN9A-204ENST00000452182 CHKBQ9Y259 395 aa11.66□□□□□ -0.54
SCN9A-204ENST00000452182 NCKAP1Q9Y2A7 1128 aa11.66□□□□□ -0.54
SCN9A-204ENST00000452182 CACNA1IQ9P0X4 2223 aa11.66□□□□□ -0.54
SCN9A-204ENST00000452182 A0A1W2PP55 124 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 UPK3BL1B0FP48 263 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 UPK3BL2E5RIL1 263 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 F5H423 210 aaPredicted RBP11.65□□□□□ -0.54
SCN9A-204ENST00000452182 NDC80O14777 642 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 AREL1O15033 823 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 AXIN1O15169 862 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 AP1G1O43747 822 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 RNASEH2AO75792 299 aaKnown RBP11.65□□□□□ -0.54
SCN9A-204ENST00000452182 CPP00450 1065 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 APRTP07741 180 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 TIMP2P16035 220 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 OXTRP30559 389 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 ADCY8P40145 1251 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 TNNT3P45378 269 aaPredicted RBP11.65□□□□□ -0.54
SCN9A-204ENST00000452182 VPS41P49754 854 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 BASP1P80723 227 aaKnown RBP11.65□□□□□ -0.54
SCN9A-204ENST00000452182 KCNJ11Q14654 390 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 SLC1A5Q15758 541 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 PCSK7Q16549 785 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 POM121L1PQ3SYA9 428 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 CCDC70Q6NSX1 233 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 FBXL19Q6PCT2 694 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 PCGF5Q86SE9 256 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 LINC00523Q86TU6 105 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 TTC7BQ86TV6 843 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 CACUL1Q86Y37 369 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 NOA1Q8NC60 698 aaKnown RBP11.65□□□□□ -0.54
SCN9A-204ENST00000452182 PDCD6IPQ8WUM4 868 aaKnown RBP11.65□□□□□ -0.54
SCN9A-204ENST00000452182 SCRN2Q96FV2 425 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 MCCC1Q96RQ3 725 aaPredicted RBP11.65□□□□□ -0.54
SCN9A-204ENST00000452182 LYSMD1Q96S90 227 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 SRPK1Q96SB4 655 aaKnown RBP11.65□□□□□ -0.54
SCN9A-204ENST00000452182 TRIM51Q9BSJ1 452 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 LRRC1Q9BTT6 524 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 RAB17Q9H0T7 212 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 SERGEFQ9UGK8 458 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 EML5Q05BV3 1969 aa11.65□□□□□ -0.54
SCN9A-204ENST00000452182 A0A0J9YYE9 177 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 EFCAB8A8MWE9 144 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 SMAPO00193 183 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 AP3B1O00203 1094 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 DNALI1O14645 258 aaPredicted RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 PLRG1O43660 514 aaKnown RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 TRBC1P01850 177 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 FGF1P05230 155 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 ATXN1LP0C7T5 689 aaKnown RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 DRG2P55039 364 aaKnown RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 TUBB4BP68371 445 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 ELP6Q0PNE2 266 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 QPCTQ16769 361 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 RNASEH2BQ5TBB1 312 aaKnown RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 DUPD1Q68J44 220 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 HOOK3Q86VS8 718 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 WDR5BQ86VZ2 330 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 LONP2Q86WA8 852 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 TAB3Q8N5C8 712 aaPredicted RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 PAF1Q8N7H5 531 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 BBOF1Q8ND07 529 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 SEC14L1Q92503 715 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 CPT1BQ92523 772 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 SNF8Q96H20 258 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 TBL1YQ9BQ87 522 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 NEUROG2Q9H2A3 272 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 SGK2Q9HBY8 427 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 TPX2Q9ULW0 747 aaKnown RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 UTP11Q9Y3A2 253 aaKnown RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 C10orf142B7Z368 130 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 SEC31AO94979 1220 aaKnown RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 AGTP01019 485 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 ITIH2P19823 946 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 XPAP23025 273 aaPredicted RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 ABL2P42684 1182 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 PXNP49023 591 aaPredicted RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 LMAN1P49257 510 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 EPHB1P54762 984 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 ADPRHP54922 357 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 TAS2R38P59533 333 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 SARNPP82979 210 aaKnown RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 CSTF1Q05048 431 aaKnown RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 KCTD19Q17RG1 926 aaPredicted RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 MAP7D1Q3KQU3 841 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 USP39Q53GS9 565 aaKnown RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 SIRPB2Q5JXA9 342 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 DENND5AQ6IQ26 1287 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 ERAP2Q6P179 960 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 NEK5Q6P3R8 708 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 TSSK4Q6SA08 328 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 USP45Q70EL2 814 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms