RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 RIC8AQ9NPQ8 531 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 SMYD2Q9NRG4 433 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 CISD1Q9NZ45 108 aaKnown RBP3.43□□□□□ -1.86
CLK1-204ENST00000432425 SNX9Q9Y5X1 595 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 A0A0U1RQF3 1178 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 WNT9BO14905 357 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 GRID2O43424 1007 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 ZIC3O60481 467 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 GUCY1B2O75343 617 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 GPTP24298 496 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 POU1F1P28069 291 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 PGM1P36871 562 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 KRTAP10-6P60371 365 aaPredicted RBP3.43□□□□□ -1.86
CLK1-204ENST00000432425 CHRNDQ07001 517 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 NEDD9Q14511 834 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 TAF11Q15544 211 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 ZRSR1Q15695 479 aaKnown RBP3.43□□□□□ -1.86
CLK1-204ENST00000432425 TAF12Q16514 161 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 GFI1BQ5VTD9 330 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 UNQ6126/PRO20091Q6UXV3 157 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 TADA2BQ86TJ2 420 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 GPAT4Q86UL3 456 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 ANKRD42Q8N9B4 389 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 POC1AQ8NBT0 407 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 WFIKKN2Q8TEU8 576 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 SECTM1Q8WVN6 248 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 NR4A3Q92570 626 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 ERGIC1Q969X5 290 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 TCF7L2Q9NQB0 619 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 SNTG1Q9NSN8 517 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 DONSONQ9NYP3 566 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 SMARCAL1Q9NZC9 954 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 KIAA1456Q9P272 454 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 SLC9A2Q9UBY0 812 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 CNOT7Q9UIV1 285 aaKnown RBP3.43□□□□□ -1.86
CLK1-204ENST00000432425 CDC14AQ9UNH5 594 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 PCDHAC2Q9Y5I4 1007 aa3.43□□□□□ -1.86
CLK1-204ENST00000432425 ATXN2Q99700 1313 aaKnown RBP3.42□□□□□ -1.86
CLK1-204ENST00000432425 GOLGA6L10A0A0M3HER8 536 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 CPED1A4D0V7 1026 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 NPIPB11E5RHQ5 1161 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 PIP5K1CO60331 668 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 PMS2P2O95744 297 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 CLDN2P57739 230 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 ACSM2AQ08AH3 577 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 TNFAIP1Q13829 316 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 NFIL3Q16649 462 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 AMZ1Q400G9 498 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 PPP6R3Q5H9R7 873 aaPredicted RBP3.42□□□□□ -1.86
CLK1-204ENST00000432425 ZNF667Q5HYK9 610 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 SLC22A25Q6T423 547 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 NAGSQ8N159 534 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 SCCPDHQ8NBX0 429 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 NEK9Q8TD19 979 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 CREB3L4Q8TEY5 395 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 PKP4Q99569 1192 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 EPYCQ99645 322 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 MXRA8Q9BRK3 442 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 PHF7Q9BWX1 381 aaPredicted RBP3.42□□□□□ -1.86
CLK1-204ENST00000432425 MDFICQ9P1T7 246 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 CTNNAL1Q9UBT7 734 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.42□□□□□ -1.86
CLK1-204ENST00000432425 GPR52Q9Y2T5 361 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 KIF26BQ2KJY2 2108 aa3.42□□□□□ -1.86
CLK1-204ENST00000432425 A0A087WYN8 130 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 HNRNPCL2B2RXH8 293 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 PRAC2D3DTV9 90 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 IFRD1O00458 451 aaPredicted RBP3.41□□□□□ -1.86
CLK1-204ENST00000432425 TIPRLO75663 272 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 KDM4BO94953 1096 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 CLDN14O95500 239 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 AMD1P17707 334 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 STX2P32856 288 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 PSMC2P35998 433 aaKnown RBP3.41□□□□□ -1.86
CLK1-204ENST00000432425 EFNB1P98172 346 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 TDGQ13569 410 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 ATP13A5Q4VNC0 1218 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 SETMARQ53H47 684 aaPredicted RBP3.41□□□□□ -1.86
CLK1-204ENST00000432425 FAM122CQ6P4D5 195 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 DSTYKQ6XUX3 929 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 LRRC8DQ7L1W4 858 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 C11orf65Q8NCR3 313 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 SPATA20Q8TB22 786 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 SNAPC3Q92966 411 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 FBXL8Q96CD0 374 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 ELP4Q96EB1 424 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 C3orf30Q96M34 536 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 ZNF570Q96NI8 536 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 BBS4Q96RK4 519 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 CSF3RQ99062 836 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 INTS2Q9H0H0 1204 aaKnown RBP3.41□□□□□ -1.86
CLK1-204ENST00000432425 NOX4Q9NPH5 578 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 ZNF224Q9NZL3 707 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 SIX4Q9UIU6 781 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 HSF4Q9ULV5 492 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 VDAC3Q9Y277 283 aa3.41□□□□□ -1.86
CLK1-204ENST00000432425 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.41□□□□□ -1.86
CLK1-204ENST00000432425 IGHV4OR15-8A0A075B7B6 117 aa3.4□□□□□ -1.86
CLK1-204ENST00000432425 A0A0B4J293 547 aa3.4□□□□□ -1.86
CLK1-204ENST00000432425 TEX22C9J3V5 150 aa3.4□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms