RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 OGDHQ02218 1023 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 NFATC4Q14934 902 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 UGP2Q16851 508 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 WSCD2Q2TBF2 565 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 ZSCAN23Q3MJ62 389 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 ACAD10Q6JQN1 1059 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 NYAP1Q6ZVC0 841 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 MCOLN2Q8IZK6 566 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 SDR16C5Q8N3Y7 309 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 ATL2Q8NHH9 583 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 WDR36Q8NI36 951 aaKnown RBP14.63□□□□□ -0.07
SDC1-204ENST00000429035 SCG3Q8WXD2 468 aaKnown RBP14.63□□□□□ -0.07
SDC1-204ENST00000429035 PDXPQ96GD0 296 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 TBATAQ96M53 351 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 CPEB1Q9BZB8 566 aaKnown RBP14.63□□□□□ -0.07
SDC1-204ENST00000429035 EDEM3Q9BZQ6 932 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 SUDS3Q9H7L9 328 aaPredicted RBP14.63□□□□□ -0.07
SDC1-204ENST00000429035 TAS2R14Q9NYV8 317 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.63□□□□□ -0.07
SDC1-204ENST00000429035 PCSK1NQ9UHG2 260 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 MOSPD1Q9UJG1 213 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 GPR34Q9UPC5 381 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 ATP8A1Q9Y2Q0 1164 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 MFHAS1Q9Y4C4 1052 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 UNC13CQ8NB66 2214 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 CCDC187A0A096LP49 1063 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 TCRBV5S1A1TA0A578 114 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 ERVH48-1M5A8F1 160 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 PRAMEF11O60813 436 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 PALMO75781 387 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 TNFSF15O95150 251 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 CCDC172P0C7W6 258 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 TNFAIP3P21580 790 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 SERPINA4P29622 427 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 MMP12P39900 470 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 RGRP47804 291 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 PAPOLAP51003 745 aaKnown RBP14.62□□□□□ -0.07
SDC1-204ENST00000429035 SRP54P61011 504 aaKnown RBP14.62□□□□□ -0.07
SDC1-204ENST00000429035 CFHR1Q03591 330 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 INPP5AQ14642 412 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 GRM3Q14832 879 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 CA9Q16790 459 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 GKN2Q86XP6 184 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 JAMLQ86YT9 394 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 CAMK1DQ8IU85 385 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 UMODL1-AS1Q8N2C9 162 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 ARL14Q8N4G2 192 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 AOPEPQ8N6M6 819 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 WDR48Q8TAF3 677 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 WDR92Q96MX6 357 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 APOOQ9BUR5 198 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 SNRNP25Q9BV90 132 aaKnown RBP14.62□□□□□ -0.07
SDC1-204ENST00000429035 SLC39A8Q9C0K1 460 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 LRRC19Q9H756 370 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 ATP13A3Q9H7F0 1226 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 PDFQ9HBH1 243 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 DONSONQ9NYP3 566 aa14.62□□□□□ -0.07
SDC1-204ENST00000429035 TSPAN11A1L157 253 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 B4DGG1 531 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 TNFP01375 233 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 RPLP0P05388 317 aaKnown RBP14.61□□□□□ -0.07
SDC1-204ENST00000429035 ELFN1P0C7U0 828 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 ANP32AP39687 249 aaKnown RBP14.61□□□□□ -0.07
SDC1-204ENST00000429035 PEX5P50542 639 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 SUOXP51687 545 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 PDX1P52945 283 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 RHDQ02161 417 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 MTM1Q13496 603 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 PPP6R3Q5H9R7 873 aaPredicted RBP14.61□□□□□ -0.07
SDC1-204ENST00000429035 PPP1R15BQ5SWA1 713 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 BRAT1Q6PJG6 821 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 B3GNT8Q7Z7M8 397 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 ZNF605Q86T29 641 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 ZSWIM9Q86XI8 627 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 ZNF843Q8N446 348 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 TSEN2Q8NCE0 465 aaKnown RBP14.61□□□□□ -0.07
SDC1-204ENST00000429035 GRAMD1AQ96CP6 724 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 CCDC97Q96F63 343 aaPredicted RBP14.61□□□□□ -0.07
SDC1-204ENST00000429035 GBP4Q96PP9 640 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 GFM1Q96RP9 751 aaKnown RBP14.61□□□□□ -0.07
SDC1-204ENST00000429035 ERGIC2Q96RQ1 377 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 PEBP4Q96S96 227 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 KCTD15Q96SI1 283 aaPredicted RBP14.61□□□□□ -0.07
SDC1-204ENST00000429035 DPH1Q9BZG8 443 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 FOXP3Q9BZS1 431 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 RABGEF1Q9UJ41 708 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 PCDHGA8Q9Y5G5 932 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 SCN8AQ9UQD0 1980 aa14.61□□□□□ -0.07
SDC1-204ENST00000429035 ARHGEF17Q96PE2 2063 aaPredicted RBP14.61□□□□□ -0.07
SDC1-204ENST00000429035 TMEM110-MUSTN1A8MSY1 372 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 A8MX80 341 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 CACNB4O00305 520 aaPredicted RBP14.6□□□□□ -0.07
SDC1-204ENST00000429035 BUB1BO60566 1050 aaPredicted RBP14.6□□□□□ -0.07
SDC1-204ENST00000429035 HTR7P34969 479 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 NDST2P52849 883 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 CCL7P80098 99 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 BCL2L1Q07817 233 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 VAC14Q08AM6 782 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 ASIC2Q16515 512 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 KIAA1614Q5VZ46 1190 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms