RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 KYAT3Q6YP21 454 aaKnown RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 LRRC74BQ6ZQY2 392 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 LRRC8DQ7L1W4 858 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 TMEM135Q86UB9 458 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 ULK2Q8IYT8 1036 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 ZNF296Q8WUU4 475 aaPredicted RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 HDAC11Q96DB2 347 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 IFT43Q96FT9 208 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 TSNARE1Q96NA8 513 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 WWP1Q9H0M0 922 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 MUC3BQ9H195 1237 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 SEMA6AQ9H2E6 1030 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 TNKS2Q9H2K2 1166 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 KCNK4Q9NYG8 393 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 RPL26L1Q9UNX3 145 aaKnown RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 PCDHB5Q9Y5E4 795 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 TSC2P49815 1807 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 WDFY3Q8IZQ1 3526 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 MTMR11A4FU01 709 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 MTSS1O43312 755 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 MT-ND1P03886 318 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 SERPINE1P05121 402 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 STMN1P16949 149 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 PMLP29590 882 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 RPL9P32969 192 aaKnown RBP8.42□□□□□ -1.06
CD44-208ENST00000428726 ZNF135P52742 658 aaPredicted RBP8.42□□□□□ -1.06
CD44-208ENST00000428726 CYP4F8P98187 520 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 CDK18Q07002 472 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 DSC3Q14574 896 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 KCTD11Q693B1 232 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 ITPRIPL1Q6GPH6 555 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 PKN3Q6P5Z2 889 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 SDCCAG8Q86SQ7 713 aaPredicted RBP8.42□□□□□ -1.06
CD44-208ENST00000428726 SCUBE1Q8IWY4 988 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 GALNT4Q8N4A0 578 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 PPHLN1Q8NEY8 458 aaKnown RBP8.42□□□□□ -1.06
CD44-208ENST00000428726 RCN3Q96D15 328 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 CPNE1Q99829 537 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 PCDHAC1Q9H158 963 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 PAPOLBQ9NRJ5 636 aaKnown RBP8.42□□□□□ -1.06
CD44-208ENST00000428726 EVLQ9UI08 416 aaPredicted RBP8.42□□□□□ -1.06
CD44-208ENST00000428726 NEU3Q9UQ49 428 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 ACOT9Q9Y305 439 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 ARHGAP10A1A4S6 786 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 PSMG1O95456 288 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 VNN2O95498 520 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 IGHA2P01877 340 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 PSMC3P17980 439 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 TFEBP19484 476 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 ATP6V1C1P21283 382 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 MZF1P28698 734 aaPredicted RBP8.42□□□□□ -1.06
CD44-208ENST00000428726 HADHAP40939 763 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 SERPINB8P50452 374 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 FOXA1P55317 472 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 KRT72Q14CN4 511 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 PFKFB4Q16877 469 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 SPANXN3Q5MJ09 141 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 FOXB2Q5VYV0 432 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 PM20D1Q6GTS8 502 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 CLDN19Q8N6F1 224 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 ARL14EPQ8N8R7 260 aaPredicted RBP8.42□□□□□ -1.06
CD44-208ENST00000428726 LMNTD1Q8N9Z9 388 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 LRCH3Q96II8 777 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 MTG2Q9H4K7 406 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 DCLRE1BQ9H816 532 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 CSNK1G1Q9HCP0 422 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 SEMA4BQ9NPR2 832 aaPredicted RBP8.42□□□□□ -1.06
CD44-208ENST00000428726 SRRDQ9UH36 339 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 AFF4Q9UHB7 1163 aaKnown RBP8.42□□□□□ -1.06
CD44-208ENST00000428726 DCDC2Q9UHG0 476 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 CLEC4EQ9ULY5 219 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 SSX2IPQ9Y2D8 614 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 SPO11Q9Y5K1 396 aa8.42□□□□□ -1.06
CD44-208ENST00000428726 ANTXRLA6NF34 631 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 CCDC160A6NGH7 325 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 UBXN8O00124 270 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 MATN3O15232 486 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 TRIM13O60858 407 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 GUCA1CO95843 209 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 ALDH7A1P49419 539 aaKnown RBP8.41□□□□□ -1.06
CD44-208ENST00000428726 AGTR2P50052 363 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 MRPS22P82650 360 aaKnown RBP8.41□□□□□ -1.06
CD44-208ENST00000428726 TCEA2Q15560 299 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 RABGAP1LQ5R372 815 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 WASHC2DQ5SRD0 308 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 FAM91A1Q658Y4 838 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 CCSAPQ6IQ19 270 aaPredicted RBP8.41□□□□□ -1.06
CD44-208ENST00000428726 PAOXQ6QHF9 649 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 TAS2R42Q7RTR8 314 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 RTL3Q8N8U3 475 aaKnown RBP8.41□□□□□ -1.06
CD44-208ENST00000428726 FBXO22Q8NEZ5 403 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 OR4K2Q8NGD2 314 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 WFDC5Q8TCV5 224 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 CDRT15Q96T59 188 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 IL22Q9GZX6 179 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 CATSPERBQ9H7T0 1116 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 HMX1Q9NP08 348 aaPredicted RBP8.41□□□□□ -1.06
CD44-208ENST00000428726 ADA2Q9NZK5 511 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 PCDHGB4Q9UN71 923 aa8.41□□□□□ -1.06
CD44-208ENST00000428726 PCDHGB5Q9Y5G0 923 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms