RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TBL1YQ9BQ87 522 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 TBCDQ9BTW9 1192 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 MRPL46Q9H2W6 279 aaKnown RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 CIDEBQ9UHD4 219 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 ZNF112Q9UJU3 913 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 UBQLN1Q9UMX0 589 aaKnown RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 RBMX2Q9Y388 322 aaKnown RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 ARL5AQ9Y689 179 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 MYO9BQ13459 2157 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 ANK1P16157 1881 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 RANBP2P49792 3224 aaKnown RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 IQCF5A8MTL0 148 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 UPK3BL1B0FP48 263 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 UPK3BL2E5RIL1 263 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 PDHXO00330 501 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 FBP2O00757 339 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 ASLP04424 464 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 ATP6V1B2P21281 511 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 GRM5P41594 1212 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 PTPN9P43378 593 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 TMED10P49755 219 aaKnown RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 ADARP55265 1226 aaKnown RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 RAB10P61026 200 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 FPGSQ05932 587 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 SLC10A7Q0GE19 358 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 EFEMP1Q12805 493 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 CDH17Q12864 832 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 LSAMPQ13449 338 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 TBC1D25Q3MII6 688 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 OGFOD2Q6N063 350 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 TMEM214Q6NUQ4 689 aaKnown RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 CXCL17Q6UXB2 119 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 HS3ST5Q8IZT8 346 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 MYLPFQ96A32 169 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 RTP4Q96DX8 246 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 FCRL2Q96LA5 508 aaPredicted RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 ANKRD27Q96NW4 1050 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 VPS33BQ9H267 617 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 Q9H521 79 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 ALG2Q9H553 416 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 SLC27A5Q9Y2P5 690 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 RGPD3A6NKT7 1758 aaPredicted RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 RGPD4Q7Z3J3 1758 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 PAGE1O75459 146 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 EFNA1P20827 205 aaPredicted RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 ADSLP30566 484 aaPredicted RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 CDKN1CP49918 316 aaPredicted RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 AGTR2P50052 363 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 SLC5A3P53794 718 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 SULT2A1Q06520 285 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 PRKAA1Q13131 559 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 SNX17Q15036 470 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 PIGGQ5H8A4 983 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 ZNF484Q5JVG2 852 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 B3GNT6Q6ZMB0 384 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 TTC9BQ8N6N2 239 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 PTGR2Q8N8N7 351 aaPredicted RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 CLHC1Q8NHS4 586 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 MTFMTQ96DP5 389 aaKnown RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 C12orf42Q96LP6 360 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 CNTRLQ7Z7A1 2325 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 A0A1W2PPW3 197 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 SUPT3HB4E1H0 165 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 UBFD1O14562 309 aaKnown RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 DCLK1O15075 740 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 S100BP04271 92 aaPredicted RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 HAPLN1P10915 354 aaPredicted RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 GLDCP23378 1020 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 FMO4P31512 558 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 CDKN2DP55273 166 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 DYNC1I2Q13409 638 aaKnown RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 BTBD8Q5XKL5 378 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 KDM1BQ8NB78 822 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 OR6K2Q8NGY2 324 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 CDC26Q8NHZ8 85 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 DGCR14Q96DF8 476 aaKnown RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 PRICKLE1Q96MT3 831 aaPredicted RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 FAM210AQ96ND0 272 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 NPY6RQ99463 290 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 DGCR6LQ9BY27 220 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 PALMDQ9NP74 551 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 HSFX1Q9UBD0 423 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 WARS2Q9UGM6 360 aaKnown RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 RIMS3Q9UJD0 308 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 CNOT6Q9ULM6 557 aaKnown RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 PHIPQ8WWQ0 1821 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 FER1L6Q2WGJ9 1857 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 A8MT66 165 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 TIMM44O43615 452 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 ALDH1A2O94788 518 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 GUCA1CO95843 209 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 ZNF23P17027 643 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 TUFMP49411 452 aaKnown RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 TPD52P55327 224 aaPredicted RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 WNT3AP56704 352 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 BNIP3Q12983 259 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 CYP51A1Q16850 503 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 IMPG1Q17R60 797 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 ARL13BQ3SXY8 428 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 TIGD2Q4W5G0 525 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms