RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 COL4A2P08572 1712 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 TCRBV9S1A1TA0A576 114 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 ANKRD66B4E2M5 251 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 WASH3PC4AMC7 463 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 POC1B-GALNT4F8VUJ3 575 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 RASGRF2O14827 1237 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 NPC1O15118 1278 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 UGT2B4P06133 528 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 IL9P15248 144 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 GKP32189 559 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 GRSF1Q12849 480 aaKnown RBP eCLIP17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 TDGQ13569 410 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 ANKRD20A4Q4UJ75 823 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 GDPD4Q6W3E5 623 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 GLT6D1Q7Z4J2 308 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 DSG4Q86SJ6 1040 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 RASSF3Q86WH2 238 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 CTAGE3PQ8IX95 158 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 ZNF366Q8N895 744 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 GABPB2Q8TAK5 448 aaPredicted RBP17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 ZBTB9Q96C00 473 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 SRPK1Q96SB4 655 aaKnown RBP17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 KIFC1Q9BW19 673 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 STMN4Q9H169 189 aaPredicted RBP17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 ACSS3Q9H6R3 686 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 CHRAC1Q9NRG0 131 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 HEBP1Q9NRV9 189 aa17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 THAP10Q9P2Z0 257 aaPredicted RBP17.23■□□□□ 0.35
CCDC28B-202ENST00000421922 CCDC78A2IDD5 438 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 HTRA2O43464 458 aaPredicted RBP17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 SLC4A1P02730 911 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 PRNPP04156 253 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 PDHA1P08559 390 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 HLA-EP13747 358 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 GLULP15104 373 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 XPAP23025 273 aaPredicted RBP17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 SEC13P55735 322 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 POLR2LP62875 67 aaKnown RBP17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 PDE1BQ01064 536 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 ZNF844Q08AG5 666 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 PON2Q15165 354 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 QPCTQ16769 361 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 HNRNPA1L2Q32P51 320 aaKnown RBP17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 EGFLAMQ63HQ2 1017 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 SDE2Q6IQ49 451 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 CES3Q6UWW8 571 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 CHPFQ8IZ52 775 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 ZNF513Q8N8E2 541 aaPredicted RBP17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 CHST14Q8NCH0 376 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 BRSK1Q8TDC3 778 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 LRIG1Q96JA1 1093 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 NSMCE3Q96MG7 304 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 MED4Q9NPJ6 270 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 PHTF1Q9UMS5 762 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 FAM169AQ9Y6X4 670 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 C5orf42Q9H799 3197 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 MYO10Q9HD67 2058 aa17.22■□□□□ 0.35
CCDC28B-202ENST00000421922 C2orf81A6NN90 581 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 EPHX1P07099 455 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 INHBAP08476 426 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 PIRTP0C851 137 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 SRFP11831 508 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 DRD1P21728 446 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 ATP5DP30049 168 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 SLCO1A2P46721 670 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 TFF2Q03403 129 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 LONRF1Q17RB8 773 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 USP45Q70EL2 814 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 TRMT11Q7Z4G4 463 aaKnown RBP17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 SFTPA1Q8IWL2 248 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 RIBC1Q8N443 379 aaPredicted RBP17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 EPS8L3Q8TE67 593 aaKnown RBP17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 PTPRN2Q92932 1015 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 MRRFQ96E11 262 aaKnown RBP17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 CERS2Q96G23 380 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 KLHL32Q96NJ5 620 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 TRIM56Q9BRZ2 755 aaKnown RBP17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 C20orf96Q9NUD7 363 aaPredicted RBP17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 ZFATQ9P243 1243 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 BCCIPQ9P287 314 aaKnown RBP eCLIP17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 TXNDC16Q9P2K2 825 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 PRKAG3Q9UGI9 489 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 SLC24A2Q9UI40 661 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 RABGEF1Q9UJ41 708 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 STARD13Q9Y3M8 1113 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 NFS1Q9Y697 457 aa17.21■□□□□ 0.35
CCDC28B-202ENST00000421922 GOLGA8KD6RF30 607 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 TRAFD1O14545 582 aaPredicted RBP17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 RGS16O15492 202 aaPredicted RBP17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 FZD6O60353 706 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 LEFTY1O75610 366 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 PRLP01236 227 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 CTPS1P17812 591 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 NMBRP28336 390 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 ABL2P42684 1182 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 IL12RB1P42701 662 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 MSH2P43246 934 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 PRAMEP78395 509 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 MGAT5Q09328 741 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 NAB1Q13506 487 aa17.21■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms