RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 LENG1Q96BZ8 264 aaPredicted RBP17.36■□□□□ 0.37
PHRF1-202ENST00000413872 TRMT13Q9NUP7 481 aaKnown RBP17.36■□□□□ 0.37
PHRF1-202ENST00000413872 SLC12A4Q9UP95 1085 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 NOS3P29474 1203 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 NAT16Q8N8M0 369 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 LEMD2Q8NC56 503 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 NKD2Q969F2 451 aaPredicted RBP17.36■□□□□ 0.37
PHRF1-202ENST00000413872 ANKRD27Q96NW4 1050 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 TCF25Q9BQ70 676 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 PEX10O60683 326 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 PIRTP0C851 137 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 GNA12Q03113 381 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 MRPL28Q13084 256 aaKnown RBP17.36■□□□□ 0.37
PHRF1-202ENST00000413872 LIPMQ5VYY2 423 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 PMF1Q6P1K2 205 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 GPR141Q7Z602 305 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 ECHDC2Q86YB7 292 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 ALG3Q92685 438 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 CLP1Q92989 425 aaKnown RBP17.36■□□□□ 0.37
PHRF1-202ENST00000413872 FEM1CQ96JP0 617 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 SEPHS2Q99611 448 aa17.36■□□□□ 0.37
PHRF1-202ENST00000413872 INTS7Q9NVH2 962 aaKnown RBP17.36■□□□□ 0.37
PHRF1-202ENST00000413872 LEF1Q9UJU2 399 aaPredicted RBP17.36■□□□□ 0.37
PHRF1-202ENST00000413872 ISM1B1AKI9 464 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 COPZ1P61923 177 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 DNAJC14Q6Y2X3 702 aaPredicted RBP17.35■□□□□ 0.37
PHRF1-202ENST00000413872 CEP68Q76N32 757 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 QKIQ96PU8 341 aaKnown RBP eCLIP17.35■□□□□ 0.37
PHRF1-202ENST00000413872 NUDT14O95848 222 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 SOX6P35712 828 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 DAOAP59103 153 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 FAM151BQ6UXP7 276 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 ITFG1Q8TB96 612 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 KCTD4Q8WVF5 259 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 NDNQ99608 321 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 COL6A2P12110 1019 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 GRIA4P48058 902 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 FPGSQ05932 587 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 XKR6Q5GH73 641 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 PACS1Q6VY07 963 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 TSEN2Q8NCE0 465 aaKnown RBP17.35■□□□□ 0.37
PHRF1-202ENST00000413872 KREMEN2Q8NCW0 462 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 KCTD15Q96SI1 283 aaPredicted RBP17.35■□□□□ 0.37
PHRF1-202ENST00000413872 APOL4Q9BPW4 351 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 PIF1Q9H611 641 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 GLYATL1P3A0A0U1RQE8 302 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 KCNU1A8MYU2 1149 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 PIK3R1P27986 724 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 PBX3P40426 434 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 GABRB2P47870 512 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 CLK3P49761 638 aaKnown RBP17.35■□□□□ 0.37
PHRF1-202ENST00000413872 JAM2P57087 298 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 GAD2Q05329 585 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 CCDC142Q17RM4 750 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 PHYKPLQ8IUZ5 450 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 ZNF384Q8TF68 577 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 LINGO1Q96FE5 620 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 VMP1Q96GC9 406 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 IKZF4Q9H2S9 585 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 CHKBQ9Y259 395 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 MRPS33Q9Y291 106 aaKnown RBP17.35■□□□□ 0.37
PHRF1-202ENST00000413872 COQ4Q9Y3A0 265 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 RAI2Q9Y5P3 530 aa17.35■□□□□ 0.37
PHRF1-202ENST00000413872 XRN1Q8IZH2 1706 aaKnown RBP17.35■□□□□ 0.37
PHRF1-202ENST00000413872 ABHD14A-ACY1A0A1B0GW23 586 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 PIPSLA2A3N6 862 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 AP5B1Q2VPB7 878 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 ZNF697Q5TEC3 545 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 RAVER1Q8IY67 606 aaKnown RBP17.34■□□□□ 0.37
PHRF1-202ENST00000413872 C12orf50Q8NA57 414 aaPredicted RBP17.34■□□□□ 0.37
PHRF1-202ENST00000413872 STYXQ8WUJ0 223 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 SLC25A51Q9H1U9 297 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 HDAC3O15379 428 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 LCA5LO95447 670 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 KRT75O95678 551 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 EFCAB3Q8N7B9 438 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 PLD5Q8N7P1 536 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 FERD3LQ96RJ6 166 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 SNX15Q9NRS6 342 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 DUS2Q9NX74 493 aaKnown RBP17.34■□□□□ 0.37
PHRF1-202ENST00000413872 TCRBV9S1A1TA0A576 114 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 POP4O95707 220 aaKnown RBP17.34■□□□□ 0.37
PHRF1-202ENST00000413872 C8AP07357 584 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 LRPAP1P30533 357 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 SPAM1P38567 509 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 ABRQ12979 859 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 CBX2Q14781 532 aaPredicted RBP17.34■□□□□ 0.37
PHRF1-202ENST00000413872 FAM84AQ96KN4 292 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 DUSP12Q9UNI6 340 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 LRRC37A3O60309 1634 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 SLC38A8A6NNN8 435 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 ATG7O95352 703 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 CXCR3P49682 368 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 CTBP1Q13363 440 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 TPD52L3Q96J77 140 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 DNAJC1Q96KC8 554 aaKnown RBP17.34■□□□□ 0.37
PHRF1-202ENST00000413872 TMEM175Q9BSA9 504 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 C9orf16Q9BUW7 83 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 OSBPL6Q9BZF3 934 aa17.34■□□□□ 0.37
PHRF1-202ENST00000413872 GBA3Q9H227 469 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms