RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 KCTD6Q8NC69 237 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 ZNF670Q9BS34 389 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 TCEAL2Q9H3H9 227 aaPredicted RBP19.2■□□□□ 0.66
SF3A1-202ENST00000411423 DNAJC28Q9NX36 388 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 ATP8A1Q9Y2Q0 1164 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 HYOU1Q9Y4L1 999 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 PCDHGC4Q9Y5F7 938 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 TDRD6O60522 2096 aaKnown RBP19.2■□□□□ 0.66
SF3A1-202ENST00000411423 C3orf70A6NLC5 250 aaPredicted RBP19.19■□□□□ 0.66
SF3A1-202ENST00000411423 FFAR2O15552 330 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 HTRA2O43464 458 aaPredicted RBP19.19■□□□□ 0.66
SF3A1-202ENST00000411423 SIGLEC6O43699 453 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 NEBLO76041 1014 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 CAPNS1P04632 268 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 XPAP23025 273 aaPredicted RBP19.19■□□□□ 0.66
SF3A1-202ENST00000411423 SERPINB6P35237 376 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 RABIFP47224 123 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 SUOXP51687 545 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 ELP6Q0PNE2 266 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 TRAF2Q12933 501 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 ZNF235Q14590 738 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 TSR1Q2NL82 804 aaKnown RBP19.19■□□□□ 0.66
SF3A1-202ENST00000411423 CCNI2Q6ZMN8 369 aaPredicted RBP19.19■□□□□ 0.66
SF3A1-202ENST00000411423 TMPRSS7Q7RTY8 843 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 RBFAQ8N0V3 343 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 TEX26Q8N6G2 289 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 FAM174AQ8TBP5 190 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 FUBP1Q96AE4 644 aaKnown RBP19.19■□□□□ 0.66
SF3A1-202ENST00000411423 NUDCD1Q96RS6 583 aa19.19■□□□□ 0.66
SF3A1-202ENST00000411423 USP24Q9UPU5 2620 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 FAM149AA5PLN7 773 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 A8MX80 341 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 CSF2P04141 144 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 KDELR1P24390 212 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 GARSP41250 739 aaKnown RBP19.18■□□□□ 0.66
SF3A1-202ENST00000411423 RENBPP51606 427 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 AP1S1P61966 158 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 PDK2Q15119 407 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 KCTD16Q68DU8 428 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 LIPIQ6XZB0 460 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 PARGQ86W56 976 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 DCP2Q8IU60 420 aaKnown RBP19.18■□□□□ 0.66
SF3A1-202ENST00000411423 PELI3Q8N2H9 469 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 PLA2G15Q8NCC3 412 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 RFFLQ8WZ73 363 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 IFT43Q96FT9 208 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 SMIM14Q96QK8 99 aa19.18■□□□□ 0.66
SF3A1-202ENST00000411423 LY6G6EA0A0G2JKS1 128 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 A0A0U1RQS6 177 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 NME1P15531 152 aaKnown RBP19.17■□□□□ 0.66
SF3A1-202ENST00000411423 MMP13P45452 471 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 ZNF75DP51815 510 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 SMAD1Q15797 465 aaKnown RBP19.17■□□□□ 0.66
SF3A1-202ENST00000411423 CFAP58Q5T655 872 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 MARC1Q5VT66 337 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 DPPA4Q7L190 304 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 KDF1Q8NAX2 398 aaPredicted RBP19.17■□□□□ 0.66
SF3A1-202ENST00000411423 ZNF548Q8NEK5 533 aaPredicted RBP19.17■□□□□ 0.66
SF3A1-202ENST00000411423 OR4C6Q8NH72 309 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 MAML1Q92585 1016 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 NT5MQ9NPB1 228 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 SCUBE2Q9NQ36 999 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 B4GALT6Q9UBX8 382 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 U3KQA8 63 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 EPG5Q9HCE0 2579 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 ZZEF1O43149 2961 aa19.17■□□□□ 0.66
SF3A1-202ENST00000411423 ZFHX4Q86UP3 3567 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 RFPL3O75679 317 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 KRT37O76014 449 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 KRT7P08729 469 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 ZNF211Q13398 564 aaPredicted RBP19.16■□□□□ 0.66
SF3A1-202ENST00000411423 LRRC14Q15048 493 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 AGERQ15109 404 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 TCEAL1Q15170 157 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 ERAP2Q6P179 960 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 RHOT2Q8IXI1 618 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 PLD5Q8N7P1 536 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 RNF157Q96PX1 679 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 GOLPH3Q9H4A6 298 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 DTLQ9NZJ0 730 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 ZMIZ1Q9ULJ6 1067 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 PCDHGA1Q9Y5H4 931 aa19.16■□□□□ 0.66
SF3A1-202ENST00000411423 DMXL2Q8TDJ6 3036 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.15■□□□□ 0.66
SF3A1-202ENST00000411423 K7ESM1 405 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 GCATO75600 419 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 RECQL5O94762 991 aaPredicted RBP19.15■□□□□ 0.66
SF3A1-202ENST00000411423 LCA5LO95447 670 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 PCCBP05166 539 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 CELA2BP08218 269 aaPredicted RBP19.15■□□□□ 0.66
SF3A1-202ENST00000411423 PDHA1P08559 390 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 JUNDP17535 347 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 CKMT2P17540 419 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 LHCGRP22888 699 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 HSPA9P38646 679 aaKnown RBP19.15■□□□□ 0.66
SF3A1-202ENST00000411423 ARHGAP25P42331 645 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 DSC2Q02487 901 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 CAMK2BQ13554 666 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 INPP5AQ14642 412 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 NPNTQ6UXI9 565 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms