RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 OR6Y1Q8NGX8 325 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 NOL6Q9H6R4 1146 aaKnown RBP13.47□□□□□ -0.25
VPS54-203ENST00000409558 LRFN2Q9ULH4 789 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 ZNF487B1APH4 448 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 SUPT3HB4E1H0 165 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 NR5A2O00482 541 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 SUPT3HO75486 399 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 RAP1GDS1P52306 607 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 FCGRTP55899 365 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 PRKAA1Q13131 559 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 PTK2BQ14289 1009 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 PCBP1Q15365 356 aaKnown RBP eCLIP13.46□□□□□ -0.25
VPS54-203ENST00000409558 SIRPB2Q5JXA9 342 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 TSTD2Q5T7W7 516 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 KIAA1841Q6NSI8 718 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 KLC3Q6P597 504 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 FAM171BQ6P995 826 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 NUDT8Q8WV74 236 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 SERPINB11Q96P15 392 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 VAT1Q99536 393 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 KIFC1Q9BW19 673 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 TM6SF2Q9BZW4 377 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 BATF3Q9NR55 127 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 DNAJC28Q9NX36 388 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 SLC45A1Q9Y2W3 748 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 MOXD2PA6NHM9 499 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 LINC00032P0C843 101 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 DPP6P42658 865 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 UGP2Q16851 508 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 INSCQ1MX18 579 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 RNF19BQ6ZMZ0 732 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 TAS2R42Q7RTR8 314 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 CUZD1Q86UP6 607 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 LPCAT1Q8NF37 534 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 SOCS4Q8WXH5 440 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 ATP6V1E2Q96A05 226 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 ZYG11BQ9C0D3 744 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 OSBPL2Q9H1P3 480 aa13.46□□□□□ -0.25
VPS54-203ENST00000409558 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.46□□□□□ -0.252e-6■■□□□ 11.7
VPS54-203ENST00000409558 SEPT4O43236 478 aa13.46□□□□□ -0.26
VPS54-203ENST00000409558 SEC24DO94855 1032 aaPredicted RBP13.46□□□□□ -0.26
VPS54-203ENST00000409558 THRAP10827 490 aa13.46□□□□□ -0.26
VPS54-203ENST00000409558 CDK7P50613 346 aa13.46□□□□□ -0.26
VPS54-203ENST00000409558 RENBPP51606 427 aa13.46□□□□□ -0.26
VPS54-203ENST00000409558 MED21Q13503 144 aa13.46□□□□□ -0.26
VPS54-203ENST00000409558 CEACAM7Q14002 265 aa13.46□□□□□ -0.26
VPS54-203ENST00000409558 RSPO2Q6UXX9 243 aaPredicted RBP13.46□□□□□ -0.26
VPS54-203ENST00000409558 PTGR2Q8N8N7 351 aaPredicted RBP13.46□□□□□ -0.26
VPS54-203ENST00000409558 AUTS2Q8WXX7 1259 aa13.46□□□□□ -0.26
VPS54-203ENST00000409558 FCRL5Q96RD9 977 aa13.46□□□□□ -0.26
VPS54-203ENST00000409558 MID1IP1Q9NPA3 183 aa13.46□□□□□ -0.26
VPS54-203ENST00000409558 ENTPD7Q9NQZ7 604 aa13.46□□□□□ -0.26
VPS54-203ENST00000409558 MKS1Q9NXB0 559 aa13.46□□□□□ -0.26
VPS54-203ENST00000409558 VWA7Q9Y334 891 aa13.46□□□□□ -0.26
VPS54-203ENST00000409558 CABYRO75952 493 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 GOT2P00505 430 aaKnown RBP13.45□□□□□ -0.26
VPS54-203ENST00000409558 MRPS35P82673 323 aaKnown RBP13.45□□□□□ -0.26
VPS54-203ENST00000409558 C6orf52Q5T4I8 152 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 DRC3Q9H069 523 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 SNX13Q9Y5W8 968 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 A0A0G2JMZ2 1700 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 LRRC37A2A6NM11 1700 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 FAM149AA5PLN7 773 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 A8MT66 165 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 ENPP3O14638 875 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 ADAM12O43184 909 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 PQBP1O60828 265 aaKnown RBP13.45□□□□□ -0.26
VPS54-203ENST00000409558 GJB5O95377 273 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 LYNP07948 512 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 PSMC3P17980 439 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 PIK3CGP48736 1102 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 APBB2Q92870 758 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 LRCH3Q96II8 777 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 CDK15Q96Q40 435 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 C1orf50Q9BV19 199 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 UBE2OQ9C0C9 1292 aaKnown RBP13.45□□□□□ -0.26
VPS54-203ENST00000409558 CCDC68Q9H2F9 335 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 MMADHCQ9H3L0 296 aaPredicted RBP13.45□□□□□ -0.26
VPS54-203ENST00000409558 DTNAQ9Y4J8 743 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 PCDHB5Q9Y5E4 795 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 SLC4A7Q9Y6M7 1214 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 RGSL1A5PLK6 1076 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 RHOBTB1O94844 696 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 CKBP12277 381 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 CYBAP13498 195 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 CTPS1P17812 591 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 PPARGP37231 505 aaPredicted RBP13.45□□□□□ -0.26
VPS54-203ENST00000409558 ARCN1P48444 511 aaKnown RBP13.45□□□□□ -0.26
VPS54-203ENST00000409558 FASTKQ14296 549 aaKnown RBP13.45□□□□□ -0.26
VPS54-203ENST00000409558 LIMS2Q7Z4I7 341 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 PGBD5Q8N414 524 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 FAM110BQ8TC76 370 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 TUBGCP3Q96CW5 907 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 C1QTNF1Q9BXJ1 281 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 ADAM28Q9UKQ2 775 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 TBKBP1A7MCY6 615 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 UBDO15205 165 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 OR6B1O95007 311 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 FOXA1P55317 472 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 MBTPS1Q14703 1052 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms