RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 LRRC8EQ6NSJ5 796 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 CCDC124Q96CT7 223 aaKnown RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 PRICKLE1Q96MT3 831 aaPredicted RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 PRKD2Q9BZL6 878 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 ILKAPQ9H0C8 392 aaPredicted RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 DENND2DQ9H6A0 471 aaPredicted RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 ALG9Q9H6U8 611 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 SCUBE2Q9NQ36 999 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 TREX1Q9NSU2 369 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 OGDHLQ9ULD0 1010 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 SCN5AQ14524 2016 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 SPECC1L-ADORA2AF8WAN1 911 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 GSC2O15499 205 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 DLX3O60479 287 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 GLP2RO95838 553 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 GOT2P00505 430 aaKnown RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 SOD2P04179 222 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 EZRP15311 586 aaKnown RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 SKIV2L2P42285 1042 aaKnown RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 YBEYP58557 167 aaPredicted RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 SMARCB1Q12824 385 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 CDH18Q13634 790 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 ATXN7L2Q5T6C5 722 aaPredicted RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 MAVSQ7Z434 540 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 RBM15BQ8NDT2 890 aaKnown RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 OR4K2Q8NGD2 314 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 MAPK15Q8TD08 544 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 MICAL1Q8TDZ2 1067 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 TMA16Q96EY4 203 aaKnown RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 FAM167BQ9BTA0 163 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 SAR1AQ9NR31 198 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 FCF1Q9Y324 198 aaKnown RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 VWA8A3KMH1 1905 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 CCDC162PA2VCL2 907 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 K7ERQ8 282 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 TEX28O15482 410 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 GPR39O43194 453 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 GABRR2P28476 465 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 GKP32189 559 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 EPHB3P54753 998 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 PRMT2P55345 433 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 RING1Q06587 406 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 ADGRF1Q5T601 910 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 CRIPAKQ8N1N5 446 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 ANKRD49Q8WVL7 239 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 TOP1MTQ969P6 601 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 MRPL17Q9NRX2 175 aaKnown RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 NKX1-2Q9UD57 310 aaPredicted RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 SEPT3Q9UH03 358 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 VWA7Q9Y334 891 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 CPQQ9Y646 472 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 CHD7Q9P2D1 2997 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 SIN3BO75182 1162 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 ZDHHC11BP0C7U3 371 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 CTPS1P17812 591 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 FMO4P31512 558 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 NRG1Q02297 640 aaPredicted RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 KPNB1Q14974 876 aaKnown RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 HECTD2Q5U5R9 776 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 TMEM198Q66K66 360 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 KIAA0930Q6ICG6 404 aaPredicted RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 GLT6D1Q7Z4J2 308 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 PHTF2Q8N3S3 785 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 C2CD4AQ8NCU7 369 aaPredicted RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 OR52B2Q96RD2 323 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 CFHR5Q9BXR6 569 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 POMKQ9H5K3 350 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 OXSMQ9NWU1 459 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 NCF1BA6NI72 391 aaPredicted RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 NCF1CA8MVU1 366 aaPredicted RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 ANP32DO95626 131 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 IGLV3-27P01718 113 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 MYL4P12829 197 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 NCF1P14598 390 aaPredicted RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 GM2AP17900 193 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 HOXD9P28356 352 aaPredicted RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 MAPKAPK2P49137 400 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 CDKN1CP49918 316 aaPredicted RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 CDH4P55283 916 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 FAM83EQ2M2I3 478 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 STXBP5Q5T5C0 1151 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 CFAP61Q8NHU2 1237 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 CALML6Q8TD86 181 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 INPP5DQ92835 1189 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 PTCD3Q96EY7 689 aaKnown RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 RPL10LQ96L21 214 aaKnown RBP11.19□□□□□ -0.62
TCOF1-203ENST00000394269 TLE6Q9H808 572 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 SPG21Q9NZD8 308 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 ZNF212Q9UDV6 495 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 ZDHHC2Q9UIJ5 367 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 PCDHB9Q9Y5E1 797 aa11.19□□□□□ -0.62
TCOF1-203ENST00000394269 CD3EAPO15446 510 aaKnown RBP11.18□□□□□ -0.62
TCOF1-203ENST00000394269 LDB2O43679 373 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CLDN11O75508 207 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 ATXN1LP0C7T5 689 aaKnown RBP11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CD1EP15812 388 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 TFEBP19484 476 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CDKN2DP55273 166 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CDH13P55290 713 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms