RNA–Protein interactions for RNA: ENST00000392128.6

SMARCAL1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SMARCAL1, Length 2,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-203ENST00000392128 ABCG1P45844 678 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 LEPRP48357 1165 aaKnown RBP11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 CD151P48509 253 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 CSNK1DP48730 415 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 ARSDP51689 593 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 PRAMEP78395 509 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 TRAF2Q12933 501 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 N4BP2L1Q5TBK1 243 aaPredicted RBP11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 YTHDF3Q7Z739 585 aaKnown RBP11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 SRLQ86TD4 932 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 RBM23Q86U06 439 aaKnown RBP11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 ZNF557Q8N988 423 aaPredicted RBP11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 ACVR1CQ8NER5 493 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 HDAC10Q969S8 669 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 RMDN1Q96DB5 314 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 OTUB2Q96DC9 234 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 LMAN2LQ9H0V9 348 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 CAB39LQ9H9S4 337 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 SIRPGQ9P1W8 387 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 INTS6Q9UL03 887 aaKnown RBP11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 SLC39A10Q9ULF5 831 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 ANKRD6Q9Y2G4 727 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 KCTD3Q9Y597 815 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 PCDHGC4Q9Y5F7 938 aa11.51□□□□□ -0.57
SMARCAL1-203ENST00000392128 PLIN3O60664 434 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 RPP40O75818 363 aaKnown RBP11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 C2P06681 752 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 BPGMP07738 259 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 PDHA1P08559 390 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 CEBPBP17676 345 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 BGNP21810 368 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 ILF2Q12905 390 aaKnown RBP11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 TAF1AQ15573 450 aaPredicted RBP11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 DUSP6Q16828 381 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 PITRM1Q5JRX3 1037 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 LCA5Q86VQ0 697 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 TMEM25Q86YD3 366 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 CILP2Q8IUL8 1156 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 IRF7Q92985 503 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 ZSWIM3Q96MP5 696 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 MRPS23Q9Y3D9 190 aaKnown RBP11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 SPO11Q9Y5K1 396 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 BPTFQ12830 3046 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 RANBP2P49792 3224 aaKnown RBP11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 C2orf16Q68DN1 1984 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 FAM95CA0A1B0GW59 222 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 ANKRD66B4E2M5 251 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 K7ERQ8 282 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 FZD6O60353 706 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 GSRP00390 522 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 WEE1P30291 646 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 HLA-FP30511 346 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 PBX2P40425 430 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 MAPK8P45983 427 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 ZNF140P52738 457 aaPredicted RBP11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 IFT88Q13099 833 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 USP10Q14694 798 aaKnown RBP11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 CCDC153Q494R4 210 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 OTOAQ7RTW8 1153 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 NUDCD3Q8IVD9 361 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 KIAA1958Q8N8K9 716 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 LPCAT1Q8NF37 534 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 GPR150Q8NGU9 434 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 OR6P1Q8NGX9 317 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 DNAJC1Q96KC8 554 aaKnown RBP11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 TLE6Q9H808 572 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 SPHK2Q9NRA0 654 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 NLE1Q9NVX2 485 aaPredicted RBP11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 ARL2BPQ9Y2Y0 163 aa11.5□□□□□ -0.57
SMARCAL1-203ENST00000392128 SMAD6O43541 496 aaKnown RBP11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 HAUS5O94927 633 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 PROCP04070 461 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 PIRTP0C851 137 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 NEFHP12036 1026 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 POU4F1Q01851 419 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 DLG2Q15700 870 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 ATXN7L2Q5T6C5 722 aaPredicted RBP11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 ATG16L1Q676U5 607 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 C16orf46Q6P387 395 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 GLT6D1Q7Z4J2 308 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 PTAR1Q7Z6K3 402 aaPredicted RBP11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 ARID3BQ8IVW6 561 aaPredicted RBP11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 MFSD6LQ8IWD5 586 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 CCDC63Q8NA47 563 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 MDGA1Q8NFP4 955 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 SMG7Q92540 1137 aaKnown RBP11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 TBATAQ96M53 351 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 MECRQ9BV79 373 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 TSSK1BQ9BXA7 367 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 PIDD1Q9HB75 910 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 MARK1Q9P0L2 795 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 TMEM216Q9P0N5 145 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 C2orf81A6NN90 581 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 NEDD8-MDP1E9PL57 170 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 SLC9A3R1O14745 358 aaPredicted RBP11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 COL6A2P12110 1019 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 CLCN5P51795 746 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 RAB10P61026 200 aa11.49□□□□□ -0.57
SMARCAL1-203ENST00000392128 FUT11Q495W5 492 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms