RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TWSG1Q9GZX9 223 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 Q9H521 79 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 FGFR1OP2Q9NVK5 253 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 GTF3C4Q9UKN8 822 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 KCNE2Q9Y6J6 123 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 AP1M2Q9Y6Q5 423 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ATRNO75882 1429 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 DIP2AQ14689 1571 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 GSG1L2A8MUP6 293 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 NFIBO00712 420 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PDXKO00764 312 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 TRAFD1O14545 582 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 KIAA0513O60268 411 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 EIF4EP06730 217 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 FGRP09769 529 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 MTHFD1P11586 935 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 CCNFP41002 786 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PRCPP42785 496 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ARCN1P48444 511 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 RWDD2BP57060 319 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 COPS2P61201 443 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 DUSP4Q13115 394 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 COL9A3Q14050 684 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 PPM1JQ5JR12 505 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 GK5Q6ZS86 529 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 TRAPPC11Q7Z392 1133 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 UNC5BQ8IZJ1 945 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CYP4Z2PQ8N1L4 340 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 COLGALT1Q8NBJ5 622 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 DNAAF1Q8NEP3 725 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ETNPPLQ8TBG4 499 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 LRIG1Q96JA1 1093 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 SLC25A23Q9BV35 468 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CPEB1Q9BZB8 566 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 C6orf62Q9GZU0 229 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 SLC39A2Q9NP94 309 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 SAMSN1Q9NSI8 373 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 CATSPERZQ9NTU4 200 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 FBXO28Q9NVF7 368 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 RBM22Q9NW64 420 aaKnown RBP eCLIP4.12□□□□□ -1.75
USH2A-202ENST00000366942 MFHAS1Q9Y4C4 1052 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 COPG1Q9Y678 874 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 NWD1Q149M9 1564 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ZNF726A6NNF4 738 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 SLC27A2O14975 620 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ATP9AO75110 1047 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 SIN3BO75182 1162 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CDK14O94921 469 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PDHA1P08559 390 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 C1SP09871 688 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 BMP1P13497 986 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 VAV1P15498 845 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ATF4P18848 351 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 DGKAP23743 735 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CLK2P49760 499 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 LGALS4P56470 323 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CXADRP78310 365 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 GCNT1Q02742 428 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CLCQ05315 142 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PFKFB3Q16875 520 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 DUPD1Q68J44 220 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 TMC3Q7Z5M5 1100 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PXKQ7Z7A4 578 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 FAM81AQ8TBF8 368 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PYROXD1Q8WU10 500 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 THOC3Q96J01 351 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 TESK2Q96S53 571 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 NAT9Q9BTE0 207 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 TMEM121BQ9BXQ6 578 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 PPP1R14DQ9NXH3 145 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 BARHL2Q9NY43 387 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ADAMTS1Q9UHI8 967 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 GTF2IRD1Q9UHL9 959 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 FBXO4Q9UKT5 387 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 FAM96BQ9Y3D0 163 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 MAU2Q9Y6X3 613 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PXDNLA1KZ92 1463 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PRAMEF26H0Y7S4 382 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 NFKBIEO00221 500 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PIK3CDO00329 1044 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 O00370 1275 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 RAD51BO15315 384 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 RNGTTO60942 597 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 F11P03951 625 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 TPOP07202 933 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 THEGLP0DJG4 465 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 NR2F1P10589 423 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 YBX3P16989 372 aaKnown RBP eCLIP4.12□□□□□ -1.75
USH2A-202ENST00000366942 HOXB9P17482 250 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 LHCGRP22888 699 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 HOXD12P35452 270 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 MAP2K4P45985 399 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 POLR2FP61218 127 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 VSNL1P62760 191 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 HDAC1Q13547 482 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 KRR1Q13601 381 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 FGFBP1Q14512 234 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 HIF1AQ16665 826 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 TCTE1Q5JU00 501 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 SNX20Q7Z614 316 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms