RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 SPO11Q9Y5K1 396 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 RPS6KL1Q9Y6S9 549 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 F5P12259 2224 aa20.02■□□□□ 0.79
CLN3-205ENST00000359984 SHISA7A6NL88 538 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 SIN3BO75182 1162 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 SPAG6O75602 509 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 LEFTY1O75610 366 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 CTSLP07711 333 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 GSTA2P09210 222 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 PHBP35232 272 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 EPHB1P54762 984 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 RPL26P61254 145 aaKnown RBP20.01■□□□□ 0.79
CLN3-205ENST00000359984 FAM193AP78312 1265 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 ENPP2Q13822 863 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 CRYMQ14894 314 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 ANKRD20A4Q4UJ75 823 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 LRIG3Q6UXM1 1119 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 GDPD4Q6W3E5 623 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 ZSWIM9Q86XI8 627 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 STK40Q8N2I9 435 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 ZNF513Q8N8E2 541 aaPredicted RBP20.01■□□□□ 0.79
CLN3-205ENST00000359984 PPHLN1Q8NEY8 458 aaKnown RBP20.01■□□□□ 0.79
CLN3-205ENST00000359984 BLOC1S5Q8TDH9 187 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 FBF1Q8TES7 1133 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 PTCD2Q8WV60 388 aaKnown RBP20.01■□□□□ 0.79
CLN3-205ENST00000359984 RANBP9Q96S59 729 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 PRKAG3Q9UGI9 489 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 RABGEF1Q9UJ41 708 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 RPL26L1Q9UNX3 145 aaKnown RBP20.01■□□□□ 0.79
CLN3-205ENST00000359984 STON1Q9Y6Q2 735 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 TCRBV9S1A1TA0A576 114 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 AGPSO00116 658 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 POLBP06746 335 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 NMBRP28336 390 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 TIE1P35590 1138 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 PTPRRQ15256 657 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 GSDMBQ8TAX9 411 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 ZNF669Q96BR6 464 aaPredicted RBP20.01■□□□□ 0.79
CLN3-205ENST00000359984 MFSD3Q96ES6 412 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 KLHL32Q96NJ5 620 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 MRM3Q9HC36 420 aaKnown RBP20.01■□□□□ 0.79
CLN3-205ENST00000359984 THEGQ9P2T0 379 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 DUSP12Q9UNI6 340 aa20.01■□□□□ 0.79
CLN3-205ENST00000359984 CCDC78A2IDD5 438 aa20■□□□□ 0.79
CLN3-205ENST00000359984 HEATR9A2RTY3 570 aa20■□□□□ 0.79
CLN3-205ENST00000359984 USP1O94782 785 aa20■□□□□ 0.79
CLN3-205ENST00000359984 DRD1P21728 446 aa20■□□□□ 0.79
CLN3-205ENST00000359984 GRIA4P48058 902 aa20■□□□□ 0.79
CLN3-205ENST00000359984 IFFO1Q0D2I5 559 aa20■□□□□ 0.79
CLN3-205ENST00000359984 GRSF1Q12849 480 aaKnown RBP eCLIP20■□□□□ 0.79
CLN3-205ENST00000359984 SPANXN3Q5MJ09 141 aa20■□□□□ 0.79
CLN3-205ENST00000359984 ARMC3Q5W041 872 aa20■□□□□ 0.79
CLN3-205ENST00000359984 CHPFQ8IZ52 775 aa20■□□□□ 0.79
CLN3-205ENST00000359984 PAF1Q8N7H5 531 aa20■□□□□ 0.79
CLN3-205ENST00000359984 BRSK1Q8TDC3 778 aa20■□□□□ 0.79
CLN3-205ENST00000359984 FAM129BQ96TA1 746 aa20■□□□□ 0.79
CLN3-205ENST00000359984 SUN2Q9UH99 717 aa20■□□□□ 0.79
CLN3-205ENST00000359984 ZCWPW2A0A1B0GU75 182 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 MROH6A6NGR9 719 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 NPC1O15118 1278 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 LDB2O43679 373 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 EPHX1P07099 455 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 CTPS1P17812 591 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 ABL2P42684 1182 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 WASP42768 502 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 EIF3BP55884 814 aaKnown RBP19.99■□□□□ 0.79
CLN3-205ENST00000359984 ZNF844Q08AG5 666 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 E2F5Q15329 346 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 TRMT10BQ6PF06 316 aaKnown RBP19.99■□□□□ 0.79
CLN3-205ENST00000359984 TPRG1Q6ZUI0 275 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 UNC5BQ8IZJ1 945 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 OR8D1Q8WZ84 308 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 MSANTD3Q96H12 275 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 LRIG1Q96JA1 1093 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 PRSS16Q9NQE7 514 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 MOCS1Q9NZB8 636 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP19.99■□□□□ 0.79
CLN3-205ENST00000359984 SLC2A6Q9UGQ3 507 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 FAM169AQ9Y6X4 670 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 STAT4Q14765 748 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 ESRP1Q6NXG1 681 aaKnown RBP19.99■□□□□ 0.79
CLN3-205ENST00000359984 MDGA1Q8NFP4 955 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 FAM3CQ92520 227 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 SPOCK2Q92563 424 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 OSBPL1AQ9BXW6 950 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 ACSS3Q9H6R3 686 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 PHTF1Q9UMS5 762 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 KCTD3Q9Y597 815 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 ARL5AQ9Y689 179 aa19.99■□□□□ 0.79
CLN3-205ENST00000359984 MYLKQ15746 1914 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 A0A0J9YYE9 177 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 AURKAO14965 403 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 PIAS1O75925 651 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 ALDH1A2O94788 518 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 TRBC1P01850 177 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 C1QAP02745 245 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 ALPIP09923 528 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 STX2P32856 288 aa19.98■□□□□ 0.79
CLN3-205ENST00000359984 ELAVL3Q14576 367 aaKnown RBP19.98■□□□□ 0.79
CLN3-205ENST00000359984 C2orf27AQ580R0 203 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms