RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 HDDC3Q8N4P3 179 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 IMP4Q96G21 291 aaKnown RBP9.27□□□□□ -0.93
USP4-202ENST00000351842 FZD3Q9NPG1 666 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 PRSS16Q9NQE7 514 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 BFARQ9NZS9 450 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 IL36AQ9UHA7 158 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 DUSP12Q9UNI6 340 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 HS3ST2Q9Y278 367 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 AAR2Q9Y312 384 aaKnown RBP9.27□□□□□ -0.93
USP4-202ENST00000351842 ANKRD36A6QL64 1941 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 SLC31A1O15431 190 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 ADAM23O75077 832 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 AP2A1O95782 977 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 ERVK-10P10266 1014 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 ACADMP11310 421 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 NTSR1P30989 418 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 GEMIN4P57678 1058 aaKnown RBP9.27□□□□□ -0.93
USP4-202ENST00000351842 LPAL2Q16609 132 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 HNRNPA1L2Q32P51 320 aaKnown RBP9.27□□□□□ -0.93
USP4-202ENST00000351842 NAPEPLDQ6IQ20 393 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 CENPUQ71F23 418 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 CAND1Q86VP6 1230 aaKnown RBP9.27□□□□□ -0.93
USP4-202ENST00000351842 NAT8LQ8N9F0 302 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 OR8D1Q8WZ84 308 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 MGME1Q9BQP7 344 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 SLC2A11Q9BYW1 496 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 UNKQ9C0B0 810 aaKnown RBP9.27□□□□□ -0.93
USP4-202ENST00000351842 SUV39H2Q9H5I1 410 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 FBXL12Q9NXK8 326 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 CHD5Q8TDI0 1954 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 TP73O15350 636 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 MTX2O75431 263 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 VAPBO95292 243 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 FDFT1P37268 417 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 MAGEA4P43358 317 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 CSE1LP55060 971 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 SARNPP82979 210 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 SKOR1P84550 965 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 GAS6Q14393 721 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 KCNJ11Q14654 390 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 SLC1A5Q15758 541 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 ESRP1Q6NXG1 681 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 TRMT10BQ6PF06 316 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 GDPD4Q6W3E5 623 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 ZNF572Q7Z3I7 529 aaPredicted RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 MAML1Q92585 1016 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 PBXIP1Q96AQ6 731 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 SIPA1Q96FS4 1042 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 LMLNQ96KR4 655 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 RUNDC3BQ96NL0 473 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 VAT1Q99536 393 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 FRMD8P1Q9BZ68 369 aaPredicted RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 CDC42EP4Q9H3Q1 356 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 CAAP1Q9H8G2 361 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 MOSPD1Q9UJG1 213 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 CYP8B1Q9UNU6 501 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 TBC1D3DA0A087WVF3 549 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 TBC1D3IA0A087WXS9 549 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 TBC1D3EA0A087X179 549 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 TBC1D3KA0A087X1G2 549 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 TBC1D3FA6NER0 549 aaPredicted RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 SOBPA7XYQ1 873 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 TBC1D3LB9A6J9 549 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 POP4O95707 220 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 TBC1D3HP0C7X1 549 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 NMBRP28336 390 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 SATB1Q01826 763 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 SLC12A1Q13621 1099 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 GLE1Q53GS7 698 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 INO80DQ53TQ3 878 aaPredicted RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 C9orf64Q5T6V5 341 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 TBC1D3GQ6DHY5 549 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 TBC1D3CQ6IPX1 549 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 HIBCHQ6NVY1 386 aaPredicted RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 FAM151BQ6UXP7 276 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 C3orf62Q6ZUJ4 267 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 TBC1D3Q8IZP1 549 aaPredicted RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 AGGF1Q8N302 714 aaeCLIP9.26□□□□□ -0.93
USP4-202ENST00000351842 WFIKKN2Q8TEU8 576 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 FRS2Q8WU20 508 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 SCAMP4Q969E2 229 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 DNAJC1Q96KC8 554 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 FCRL5Q96RD9 977 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 TDRD1Q9BXT4 1180 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 LRRC40Q9H9A6 602 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 LRRC4CQ9HCJ2 640 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 CA5BQ9Y2D0 317 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 SLC27A6Q9Y2P4 619 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 NUP210Q8TEM1 1887 aaPredicted RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 TDRD6O60522 2096 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 NPIPB15A6NHN6 443 aaPredicted RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 C16orf96A6NNT2 1141 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 INPP4BO15327 924 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 MMP20O60882 483 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 RNASEH1O60930 286 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 ECHS1P30084 290 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 KIR2DL1P43626 348 aaPredicted RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 PRAMEP78395 509 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 CNTN1Q12860 1018 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 ARHGEF7Q14155 803 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms