RNA–Protein interactions for RNA: ENST00000350034.4

TRIM55-203, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,177 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-203ENST00000350034 DLG1Q12959 904 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 SLC12A1Q13621 1099 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 SETDB1Q15047 1291 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 ZNF789Q5FWF6 425 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 FSCBQ5H9T9 825 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 ZNF470Q6ECI4 717 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 NCEH1Q6PIU2 408 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 CNSTQ6PJW8 725 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 SPATA31D4Q6ZUB0 917 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 CCDC91Q7Z6B0 441 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 CRLF3Q8IUI8 442 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 CILP2Q8IUL8 1156 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 SLC41A1Q8IVJ1 513 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 C10orf107Q8IVU9 208 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 CEP97Q8IW35 865 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 CENPLQ8N0S6 344 aaPredicted RBP6.96□□□□□ -1.3
TRIM55-203ENST00000350034 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.96□□□□□ -1.3
TRIM55-203ENST00000350034 MRPL43Q8N983 215 aaKnown RBP6.96□□□□□ -1.3
TRIM55-203ENST00000350034 KREMEN2Q8NCW0 462 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 GABPB2Q8TAK5 448 aaPredicted RBP6.96□□□□□ -1.3
TRIM55-203ENST00000350034 SPPL3Q8TCT6 385 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 STYXQ8WUJ0 223 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 MRPS31Q92665 395 aaKnown RBP6.96□□□□□ -1.3
TRIM55-203ENST00000350034 BADQ92934 168 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 HDAC10Q969S8 669 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 ERP27Q96DN0 273 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 IFT43Q96FT9 208 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 ATXN7L3BQ96GX2 97 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 LRRC37BQ96QE4 947 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 RAD9AQ99638 391 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 OMDQ99983 421 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 SIKE1Q9BRV8 207 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 FEM1AQ9BSK4 669 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 TMEM106CQ9BVX2 250 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 TMEM120AQ9BXJ8 343 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 TDRD1Q9BXT4 1180 aaKnown RBP6.96□□□□□ -1.3
TRIM55-203ENST00000350034 EMILIN2Q9BXX0 1053 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 RASSF4Q9H2L5 321 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 ECT2Q9H8V3 914 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 NMRAL1Q9HBL8 299 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 TRPC7Q9HCX4 862 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 SAR1AQ9NR31 198 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 ARHGEF3Q9NR81 526 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.96□□□□□ -1.3
TRIM55-203ENST00000350034 DCTN4Q9UJW0 460 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 TLK1Q9UKI8 766 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 ARHGAP26Q9UNA1 814 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 ACOT9Q9Y305 439 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 KCTD3Q9Y597 815 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 SPO11Q9Y5K1 396 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 SHROOM3Q8TF72 1996 aa6.96□□□□□ -1.3
TRIM55-203ENST00000350034 TRAV19A0A0A6YYK7 116 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 CCDC195A0A1B0GUA6 201 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.95□□□□□ -1.3
TRIM55-203ENST00000350034 CCDC162PA2VCL2 907 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 ZBBXA8MT70 800 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 TMEM114B3SHH9 223 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 C5orf67F2Z3F1 127 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 CBX4O00257 560 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 ZNF195O14628 629 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 PHGDHO43175 533 aaKnown RBP6.95□□□□□ -1.3
TRIM55-203ENST00000350034 FZD6O60353 706 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 TRIM13O60858 407 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 H2AFYO75367 372 aaKnown RBP6.95□□□□□ -1.3
TRIM55-203ENST00000350034 MOSPD3O75425 235 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 TMCC1O94876 653 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 KLHL2O95198 593 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 GLUD1P00367 558 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 GOT2P00505 430 aaKnown RBP6.95□□□□□ -1.3
TRIM55-203ENST00000350034 LRG1P02750 347 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 MYL2P10916 166 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 RALBP11234 206 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 STMN1P16949 149 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 HOXB8P17481 243 aaPredicted RBP6.95□□□□□ -1.3
TRIM55-203ENST00000350034 OGNP20774 298 aaKnown RBP6.95□□□□□ -1.3
TRIM55-203ENST00000350034 HOXA9P31269 272 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 SLC26A3P40879 764 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 CSKP41240 450 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 SLC1A6P48664 564 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 CSNK1DP48730 415 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 SCNN1BP51168 640 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 SUOXP51687 545 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 CLCN4P51793 760 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 ABCE1P61221 599 aaKnown RBP6.95□□□□□ -1.3
TRIM55-203ENST00000350034 UBE3AQ05086 875 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 TRAF2Q12933 501 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 TUBB3Q13509 450 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 ITGA9Q13797 1035 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 GALNT3Q14435 633 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 KRT72Q14CN4 511 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 TAF1AQ15573 450 aaPredicted RBP6.95□□□□□ -1.3
TRIM55-203ENST00000350034 TYSND1Q2T9J0 566 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 TSNAXIP1Q2TAA8 658 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 TAF1BQ53T94 588 aaPredicted RBP6.95□□□□□ -1.3
TRIM55-203ENST00000350034 RBM20Q5T481 1227 aaKnown RBP6.95□□□□□ -1.3
TRIM55-203ENST00000350034 PSRC1Q6PGN9 363 aaPredicted RBP6.95□□□□□ -1.3
TRIM55-203ENST00000350034 ZCCHC23Q6ZST2 131 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 Q7L0L9 218 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 TMC7Q7Z402 723 aa6.95□□□□□ -1.3
TRIM55-203ENST00000350034 CLNKQ7Z7G1 428 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms