RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 KCNK1O00180 336 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 MAFGO15525 162 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 B4GALT5O43286 388 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 MSI1O43347 362 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 NPHS1O60500 1241 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 BCAS1O75363 584 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 PRKCBP05771 671 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 C7P10643 843 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 HSPA8P11142 646 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 KCNA5P22460 613 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 NMBRP28336 390 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 RPS9P46781 194 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 GLUD2P49448 558 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PLA2G16P53816 162 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 RAD23AP54725 363 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 FRG1Q14331 258 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 TARBP2Q15633 366 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 PYCR3Q53H96 274 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 TMTC4Q5T4D3 741 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 MFSD4BQ5TF39 518 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 XRRA1Q6P2D8 792 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 AQP12AQ8IXF9 295 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 RAVER1Q8IY67 606 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 NAT16Q8N8M0 369 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 Q8N9G6 341 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 MAGEE2Q8TD90 523 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 FAM151AQ8WW52 585 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PCYT2Q99447 389 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 APOL2Q9BQE5 337 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 SLC25A23Q9BV35 468 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PRDM12Q9H4Q4 367 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 ATP13A3Q9H7F0 1226 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PTPRHQ9HD43 1115 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 VTA1Q9NP79 307 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PCDH12Q9NPG4 1184 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 TRPV5Q9NQA5 729 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 RNF146Q9NTX7 359 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 TBC1D13Q9NVG8 400 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 ABCD2Q9UBJ2 740 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 KLQ9UEF7 1012 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 BPTFQ12830 3046 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 SPATA31C2B4DYI2 1134 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 C9JVG2 144 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 FXYD1O00168 92 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 TOR1BO14657 336 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 ARPC2O15144 300 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 MYO1DO94832 1006 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 AP2A1O95782 977 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 MT-ND1P03886 318 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 UGT2B4P06133 528 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 HTR1AP08908 422 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 ALDOCP09972 364 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 MTHFD1P11586 935 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 NPR1P16066 1061 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 TPH1P17752 444 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 CHRM3P20309 590 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 EEF1B2P24534 225 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 TKTP29401 623 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 ATP6V0D1P61421 351 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 IFITM2Q01629 132 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 CAMK2BQ13554 666 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 ZNF846Q147U1 533 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 SOWAHAQ2M3V2 549 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 TIGD2Q4W5G0 525 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PKDCCQ504Y2 493 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PPP1R26Q5T8A7 1209 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 LCN8Q6JVE9 175 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 ZNF280DQ6N043 979 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 VASH1Q7L8A9 365 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 ERO1BQ86YB8 467 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 ANKRD13BQ86YJ7 626 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PARP8Q8N3A8 854 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 MFSD4AQ8N468 514 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 CCNYQ8ND76 341 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PNPT1Q8TCS8 783 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 ZFP90Q8TF47 636 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 CENPIQ92674 756 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 DHRS1Q96LJ7 313 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 MUS81Q96NY9 551 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 NIFKQ9BYG3 293 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 YTHDF1Q9BYJ9 559 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 POMKQ9H5K3 350 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 CASS4Q9NQ75 786 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 CMTM6Q9NX76 183 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PKD2L2Q9NZM6 624 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 ANKMY1Q9P2S6 941 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 ATP6AP2A0A1C7CYW4 349 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 A6NL46 340 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 XYLBO75191 536 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 ATP6AP2O75787 350 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 AHSGP02765 367 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 GFAPP14136 432 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PTPN2P17706 415 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 IL10P22301 178 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 PSMA4P25789 261 aaKnown RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 HTR1BP28222 390 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 CD68P34810 354 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 RFC2P35250 354 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 TPTEP56180 551 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 INCA1Q0VD86 236 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms