RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 SCYL1Q96KG9 808 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 SIGLEC10Q96LC7 697 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 TUBB6Q9BUF5 446 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 ZNF358Q9NW07 568 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 CLIC5Q9NZA1 410 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 SUN2Q9UH99 717 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 LSM7Q9UK45 103 aaKnown RBP13.17□□□□□ -0.3
COL18A1-201ENST00000342220 RPL26L1Q9UNX3 145 aaKnown RBP13.17□□□□□ -0.3
COL18A1-201ENST00000342220 FIS1Q9Y3D6 152 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 ATG2BQ96BY7 2078 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 FGF10O15520 208 aaPredicted RBP13.17□□□□□ -0.3
COL18A1-201ENST00000342220 MT-CO1P00395 513 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 LMNAP02545 664 aaKnown RBP13.17□□□□□ -0.3
COL18A1-201ENST00000342220 ALOX15P16050 662 aaPredicted RBP13.17□□□□□ -0.3
COL18A1-201ENST00000342220 PRAMEP78395 509 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 SEMA3BQ13214 749 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 ZNF460Q14592 562 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 DENND6AQ8IWF6 608 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 TDRD5Q8NAT2 981 aaKnown RBP13.17□□□□□ -0.3
COL18A1-201ENST00000342220 LPCAT1Q8NF37 534 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 NRG4Q8WWG1 115 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 CIPCQ9C0C6 399 aa13.17□□□□□ -0.3
COL18A1-201ENST00000342220 SARS2Q9NP81 518 aaKnown RBP13.17□□□□□ -0.3
COL18A1-201ENST00000342220 UBA6A0AVT1 1052 aaPredicted RBP13.16□□□□□ -0.3
COL18A1-201ENST00000342220 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.16□□□□□ -0.3
COL18A1-201ENST00000342220 NEDD8-MDP1E9PL57 170 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 NCAM2O15394 837 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 SNRPAP09012 282 aaKnown RBP13.16□□□□□ -0.3
COL18A1-201ENST00000342220 RENBPP51606 427 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 BST1Q10588 318 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 SCAPQ12770 1279 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 HSF5Q4G112 596 aaPredicted RBP13.16□□□□□ -0.3
COL18A1-201ENST00000342220 RABGAP1LQ5R372 815 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 NAPEPLDQ6IQ20 393 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 ZBTB8BQ8NAP8 495 aaPredicted RBP13.16□□□□□ -0.3
COL18A1-201ENST00000342220 FCRL3Q96P31 734 aaPredicted RBP13.16□□□□□ -0.3
COL18A1-201ENST00000342220 TBL1YQ9BQ87 522 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 EMILIN2Q9BXX0 1053 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 CRYL1Q9Y2S2 319 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 HCFC2Q9Y5Z7 792 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 TRIOO75962 3097 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 SPAG6O75602 509 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 RHOQP17081 205 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 ERFP50548 548 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 SEMA5AQ13591 1074 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 DDX53Q86TM3 631 aaKnown RBP13.16□□□□□ -0.3
COL18A1-201ENST00000342220 ARID3BQ8IVW6 561 aaPredicted RBP13.16□□□□□ -0.3
COL18A1-201ENST00000342220 DCLK2Q8N568 766 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 FBXO27Q8NI29 283 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 HDAC11Q96DB2 347 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 PGAP3Q96FM1 320 aaPredicted RBP13.16□□□□□ -0.3
COL18A1-201ENST00000342220 SEZ6LQ9BYH1 1024 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 GBA3Q9H227 469 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 MTIF3Q9H2K0 278 aaKnown RBP13.16□□□□□ -0.3
COL18A1-201ENST00000342220 STOML1Q9UBI4 398 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 LRCH1Q9Y2L9 728 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 PLLPQ9Y342 182 aa13.16□□□□□ -0.3
COL18A1-201ENST00000342220 PDCD11Q14690 1871 aaKnown RBP13.16□□□□□ -0.3
COL18A1-201ENST00000342220 KIAA0355O15063 1070 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 ENO1P06733 434 aaKnown RBP13.15□□□□□ -0.3
COL18A1-201ENST00000342220 BMP1P13497 986 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 GNA12Q03113 381 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 KRT72Q14CN4 511 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 LGSNQ5TDP6 509 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 SNX30Q5VWJ9 437 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 ZNF534Q76KX8 674 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 TREML1Q86YW5 311 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 GDPD5Q8WTR4 605 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 LINC00597Q9H2U6 94 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 MRPS23Q9Y3D9 190 aaKnown RBP13.15□□□□□ -0.3
COL18A1-201ENST00000342220 ZNF711Q9Y462 761 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 WNT6Q9Y6F9 365 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 MATN3O15232 486 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 RFPL1O75677 317 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 NAT1P18440 290 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 ZXDBP98169 803 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 SHHQ15465 462 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 CHI3L2Q15782 390 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 ITIH5Q86UX2 942 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 CMTR2Q8IYT2 770 aaKnown RBP13.15□□□□□ -0.3
COL18A1-201ENST00000342220 TNS4Q8IZW8 715 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 SH3RF2Q8TEC5 729 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 SLC35B4Q969S0 331 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 SLC39A13Q96H72 371 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 NOL6Q9H6R4 1146 aaKnown RBP13.15□□□□□ -0.3
COL18A1-201ENST00000342220 PPARGC1AQ9UBK2 798 aaKnown RBP13.15□□□□□ -0.3
COL18A1-201ENST00000342220 BACE2Q9Y5Z0 518 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 TMEM221A6NGB7 291 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 B2RBV5 119 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 TBX10O75333 385 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 KRT38O76015 456 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 PSMG1O95456 288 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 AP2A1O95782 977 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 VHLP40337 213 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 NRIP1P48552 1158 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 RHOAP61586 193 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 CDH17Q12864 832 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 RAB33AQ14088 237 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 SH2D4BQ5SQS7 431 aa13.15□□□□□ -0.3
COL18A1-201ENST00000342220 ZNF470Q6ECI4 717 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms