RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 CXorf40AQ8TE69 158 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 AP2M1Q96CW1 435 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 SEC16BQ96JE7 1060 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 ARL15Q9NXU5 204 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 A0A087X1B8 175 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 ARHGAP10A1A4S6 786 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 KLHL33A6NCF5 533 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 B2RBV5 119 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 GSTA4O15217 222 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 HOXB6P17509 224 aaKnown RBP6.9□□□□□ -1.3
SF3B1-201ENST00000335508 OGDHQ02218 1023 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 NRG1Q02297 640 aaPredicted RBP6.9□□□□□ -1.3
SF3B1-201ENST00000335508 SLC25A11Q02978 314 aaKnown RBP6.9□□□□□ -1.3
SF3B1-201ENST00000335508 SNCBQ16143 134 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 RFWD3Q6PCD5 774 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 CATSPER1Q8NEC5 780 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 TRPV1Q8NER1 839 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 CENPIQ92674 756 aaPredicted RBP6.9□□□□□ -1.3
SF3B1-201ENST00000335508 EXOC2Q96KP1 924 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 OSBPL1AQ9BXW6 950 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 IRAK4Q9NWZ3 460 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 KCNK4Q9NYG8 393 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 GDE1Q9NZC3 331 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 GRHL1Q9NZI5 618 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 TCAF1Q9Y4C2 921 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 CCDC88AQ3V6T2 1871 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 SIPA1L3O60292 1781 aaPredicted RBP6.9□□□□□ -1.3
SF3B1-201ENST00000335508 TCRBV7S2A1N4TA0A589 114 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 UBDO15205 165 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 MYBL2P10244 700 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 ZNF30P17039 623 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 IL10P22301 178 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 PGM1P36871 562 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 PLK1P53350 603 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 MAXP61244 160 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 ILF3Q12906 894 aaKnown RBP eCLIP6.9□□□□□ -1.3
SF3B1-201ENST00000335508 NPNTQ6UXI9 565 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 SRFBP1Q8NEF9 429 aaKnown RBP6.9□□□□□ -1.3
SF3B1-201ENST00000335508 CLP1Q92989 425 aaKnown RBP6.9□□□□□ -1.3
SF3B1-201ENST00000335508 RAD51AP1Q96B01 352 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 MCCC1Q96RQ3 725 aaPredicted RBP6.9□□□□□ -1.3
SF3B1-201ENST00000335508 HERC2P3Q9BVR0 1158 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 GKN1Q9NS71 199 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 MIOSQ9NXC5 875 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 FBXL21Q9UKT6 434 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 USP3Q9Y6I4 520 aa6.9□□□□□ -1.3
SF3B1-201ENST00000335508 ZFP37Q9Y6Q3 630 aaPredicted RBP6.9□□□□□ -1.3
SF3B1-201ENST00000335508 TCHHQ07283 1943 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 INPPL1O15357 1258 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 TMEM63AO94886 807 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 RPL3P39023 403 aaKnown RBP6.9□□□□□ -1.31
SF3B1-201ENST00000335508 NSG1P42857 185 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 KLF1Q13351 362 aaPredicted RBP6.9□□□□□ -1.31
SF3B1-201ENST00000335508 MARK2Q7KZI7 788 aaKnown RBP6.9□□□□□ -1.31
SF3B1-201ENST00000335508 TTC30BQ8N4P2 665 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 PSMG2Q969U7 264 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 TRMT61BQ9BVS5 477 aaKnown RBP6.9□□□□□ -1.31
SF3B1-201ENST00000335508 OSGEPL1Q9H4B0 414 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 RNF103-CHMP3A0A140T963 221 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 SLC2A4P14672 509 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 SPAM1P38567 509 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 GPR1P46091 355 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 PRKG2Q13237 762 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 DDX39BQ13838 428 aaKnown RBP6.9□□□□□ -1.31
SF3B1-201ENST00000335508 NR6A1Q15406 480 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 SPDYAQ5MJ70 313 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 C1orf146Q5VVC0 180 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 HFE2Q6ZVN8 426 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 GPR152Q8TDT2 470 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 TBATAQ96M53 351 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 NELL2Q99435 816 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 DUS2Q9NX74 493 aaKnown RBP6.9□□□□□ -1.31
SF3B1-201ENST00000335508 TELO2Q9Y4R8 837 aa6.9□□□□□ -1.31
SF3B1-201ENST00000335508 ICE1Q9Y2F5 2266 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ULK1O75385 1050 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 EPHX1P07099 455 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 SLC35G4P0C7Q5 338 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 HOXA9P31269 272 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 CASP2P42575 452 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 AP1S2P56377 157 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 DLG2Q15700 870 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 CA9Q16790 459 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 AADACL2Q6P093 401 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 C16orf59Q7L2K0 433 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 LPCAT2Q7L5N7 544 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 GPSM1Q86YR5 675 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 CHCHD4Q8N4Q1 142 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 GBP5Q96PP8 586 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 PRMT1Q99873 361 aaKnown RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 CCSER2Q9H7U1 834 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 RUVBL2Q9Y230 463 aaKnown RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 BTN3A1O00481 513 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 PHGDHO43175 533 aaKnown RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 SLC25A14O95258 325 aaPredicted RBP6.89□□□□□ -1.31
SF3B1-201ENST00000335508 BMP10O95393 424 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 CCDC166P0CW27 439 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 GLRBP48167 497 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 BST1Q10588 318 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 WASHC5Q12768 1159 aa6.89□□□□□ -1.31
SF3B1-201ENST00000335508 ACOX1Q15067 660 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms