RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 PLCL1Q15111 1095 aa11.93□□□□□ -0.5
SHMT2-201ENST00000328923 ZMYND11Q15326 602 aa11.93□□□□□ -0.5
SHMT2-201ENST00000328923 SLC36A3Q495N2 470 aa11.93□□□□□ -0.5
SHMT2-201ENST00000328923 ZNF773Q6PK81 442 aa11.93□□□□□ -0.5
SHMT2-201ENST00000328923 TMEM179Q6ZVK1 233 aa11.93□□□□□ -0.5
SHMT2-201ENST00000328923 SIAH1Q8IUQ4 282 aa11.93□□□□□ -0.5
SHMT2-201ENST00000328923 FBXL13Q8NEE6 735 aa11.93□□□□□ -0.5
SHMT2-201ENST00000328923 WDR11Q9BZH6 1224 aa11.93□□□□□ -0.5
SHMT2-201ENST00000328923 TRIM15Q9C019 465 aa11.93□□□□□ -0.5
SHMT2-201ENST00000328923 SOX17Q9H6I2 414 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-201ENST00000328923 WDR41Q9HAD4 459 aa11.93□□□□□ -0.5
SHMT2-201ENST00000328923 FBXO40Q9UH90 709 aa11.93□□□□□ -0.5
SHMT2-201ENST00000328923 VPS28Q9UK41 221 aa11.93□□□□□ -0.5
SHMT2-201ENST00000328923 COL2A1P02458 1487 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-201ENST00000328923 PI4K2BG5E9Z4 385 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 AP3D1O14617 1153 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 TOR1AO14656 332 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 CPNE3O75131 537 aaKnown RBP11.92□□□□□ -0.5
SHMT2-201ENST00000328923 ATG13O75143 517 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 GDF11O95390 407 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 IFNB1P01574 187 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 CLEC2LP0C7M8 214 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 PSKH1P11801 424 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 CD58P19256 250 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 HTR1BP28222 390 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 BMPR2Q13873 1038 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 PPP1R26Q5T8A7 1209 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-201ENST00000328923 CDR2LQ86X02 465 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-201ENST00000328923 FBXO11Q86XK2 927 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 IGDCC3Q8IVU1 814 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 SLC22A15Q8IZD6 547 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 FAM83FQ8NEG4 500 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-201ENST00000328923 TMC2Q8TDI7 906 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 RNF170Q96K19 258 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 ASB2Q96Q27 587 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 RHOBTB2Q9BYZ6 727 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 SPC25Q9HBM1 224 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 SPDYE2BA6NHP3 402 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 C16orf96A6NNT2 1141 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 ZNF195O14628 629 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 UGT2B11O75310 529 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 TRIM16O95361 564 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 ADRB2P07550 413 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 SPDYE6P0CI01 402 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 JUNBP17275 347 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-201ENST00000328923 ATF7P17544 494 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-201ENST00000328923 ALDH4A1P30038 563 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 PPP5CP53041 499 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 RPL10AP62906 217 aaKnown RBP11.92□□□□□ -0.5
SHMT2-201ENST00000328923 GTF2BQ00403 316 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 CBLBQ13191 982 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 SLC12A1Q13621 1099 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 HIST2H2ACQ16777 129 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-201ENST00000328923 FASTKD1Q53R41 847 aaKnown RBP11.92□□□□□ -0.5
SHMT2-201ENST00000328923 FAM171BQ6P995 826 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 TFAP2DQ7Z6R9 452 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 COLGALT2Q8IYK4 626 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 CCNYL1Q8N7R7 359 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 NAT8LQ8N9F0 302 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 CYP2W1Q8TAV3 490 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 NDNFQ8TB73 568 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 SEPT1Q8WYJ6 367 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 BIRC7Q96CA5 298 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 NRBF2Q96F24 287 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 TBATAQ96M53 351 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 GMLQ99445 158 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 ENOPH1Q9UHY7 261 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 SNX7Q9UNH6 387 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 VWA7Q9Y334 891 aa11.92□□□□□ -0.5
SHMT2-201ENST00000328923 TANC1Q9C0D5 1861 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 TCRBV9S1A1TA0A576 114 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 PRR23AA6NEV1 266 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 ZBTB39O15060 712 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 SSX4O60224 188 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 ABCB7O75027 752 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 GOT2P00505 430 aaKnown RBP11.91□□□□□ -0.5
SHMT2-201ENST00000328923 NTRK1P04629 796 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 WEE2P0C1S8 567 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 MYL4P12829 197 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 CDH5P33151 784 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-201ENST00000328923 TALDO1P37837 337 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 HTR3AP46098 478 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 SOX9P48436 509 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 HARS2P49590 506 aaKnown RBP11.91□□□□□ -0.5
SHMT2-201ENST00000328923 ST13P50502 369 aaKnown RBP11.91□□□□□ -0.5
SHMT2-201ENST00000328923 NDST1P52848 882 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 OR2B6P58173 313 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 MAMLD1Q13495 774 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 ZNF544Q6NX49 715 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 CYP2R1Q6VVX0 501 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 PLEKHM3Q6ZWE6 761 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 EPHX4Q8IUS5 362 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 MFSD2AQ8NA29 543 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 TDRD5Q8NAT2 981 aaKnown RBP11.91□□□□□ -0.5
SHMT2-201ENST00000328923 SLC35B2Q8TB61 432 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 ADAM32Q8TC27 787 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 WDR18Q9BV38 432 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 LRRC40Q9H9A6 602 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 KLHL11Q9NVR0 708 aa11.91□□□□□ -0.5
SHMT2-201ENST00000328923 TNFRSF10DQ9UBN6 386 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms