RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TMEM209Q96SK2 561 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 PRPF18Q99633 342 aaKnown RBP18.83■□□□□ 0.61
CPSF3-201ENST00000238112 PCDHAC1Q9H158 963 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 SLC25A51Q9H1U9 297 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 TNFRSF12AQ9NP84 129 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 SPAG4Q9NPE6 437 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 ETAA1Q9NY74 926 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 CCDC160A6NGH7 325 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 C8BP07358 591 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 SNRPB2P08579 225 aaKnown RBP18.83■□□□□ 0.6
CPSF3-201ENST00000238112 ARSAP15289 507 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 INHBEP58166 350 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 ITKQ08881 620 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 MAPRE1Q15691 268 aaKnown RBP18.83■□□□□ 0.6
CPSF3-201ENST00000238112 HECTD2Q5U5R9 776 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 AFMIDQ63HM1 303 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 KDELC1Q6UW63 502 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 LRRTM3Q86VH5 581 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 OR10T2Q8NGX3 314 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 HMGCLL1Q8TB92 370 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 DSEQ9UL01 958 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 TLL2Q9Y6L7 1015 aa18.83■□□□□ 0.6
CPSF3-201ENST00000238112 COL4A4P53420 1690 aaPredicted RBP18.82■□□□□ 0.6
CPSF3-201ENST00000238112 FBP2O00757 339 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 POMCP01189 267 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 GALNT1Q10472 559 aaPredicted RBP18.82■□□□□ 0.6
CPSF3-201ENST00000238112 EML3Q32P44 896 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 PAOXQ6QHF9 649 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 SLC25A23Q9BV35 468 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 GRIP2Q9C0E4 1043 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 ARNT2Q9HBZ2 717 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 NT5MQ9NPB1 228 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 CPA4Q9UI42 421 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 NUDT5Q9UKK9 219 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 SARDHQ9UL12 918 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 HS3ST4Q9Y661 456 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 CYP11A1P05108 521 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 GRIK1P39086 918 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 INHBCP55103 352 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 TSPY1Q01534 308 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 RHDQ02161 417 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 RALGDSQ12967 914 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 CCL14Q16627 93 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 MGAT5BQ3V5L5 792 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 NADK2Q4G0N4 442 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 ARMC3Q5W041 872 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 OVOS1Q6IE37 1185 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 PTAR1Q7Z6K3 402 aaPredicted RBP18.82■□□□□ 0.6
CPSF3-201ENST00000238112 C14orf80Q86SX3 495 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 SPNS2Q8IVW8 549 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 THEM5Q8N1Q8 247 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 RIN3Q8TB24 985 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 RANBP9Q96S59 729 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 PKMYT1Q99640 499 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 PTPN18Q99952 460 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 SEMA6AQ9H2E6 1030 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 TRAF6Q9Y4K3 522 aa18.82■□□□□ 0.6
CPSF3-201ENST00000238112 MYLKQ15746 1914 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 MRASO14807 208 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 TRIM24O15164 1050 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 PSMC3P17980 439 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 HDCP19113 662 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 RENBPP51606 427 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 TRAP1Q12931 704 aaKnown RBP18.81■□□□□ 0.6
CPSF3-201ENST00000238112 NRF1Q16656 503 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 CILP2Q8IUL8 1156 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 SPATA2LQ8IUW3 424 aaPredicted RBP18.81■□□□□ 0.6
CPSF3-201ENST00000238112 OR6P1Q8NGX9 317 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 LPGAT1Q92604 370 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 MPP4Q96JB8 637 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 UBXN10Q96LJ8 280 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 TRMOQ9BU70 441 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 PTTG2Q9NZH5 202 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 VWA7Q9Y334 891 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 Q9Y3F1 56 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 BPTFQ12830 3046 aa18.81■□□□□ 0.6
CPSF3-201ENST00000238112 TRPA1O75762 1119 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 SRP72O76094 671 aaKnown RBP18.8■□□□□ 0.6
CPSF3-201ENST00000238112 ZNF26P17031 533 aaPredicted RBP18.8■□□□□ 0.6
CPSF3-201ENST00000238112 CD86P42081 329 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 PGFP49763 221 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 BIRC2Q13490 618 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 SLC14A2Q15849 920 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 METTL25Q8N6Q8 603 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 DDI1Q8WTU0 396 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 ANKRD49Q8WVL7 239 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 DTNBP1Q96EV8 351 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 IMP4Q96G21 291 aaKnown RBP18.8■□□□□ 0.6
CPSF3-201ENST00000238112 ZCWPW1Q9H0M4 648 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 GSTO2Q9H4Y5 243 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 ALG9Q9H6U8 611 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 HACD3Q9P035 362 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 CROTQ9UKG9 612 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 CLEC11AQ9Y240 323 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 PRORSD1PA6NEY8 169 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 VILLO15195 856 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 SUPT7LO94864 414 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 STAMBPO95630 424 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 IMPDH1P20839 514 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 MAXP61244 160 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms