RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CCDC77Q9BR77 488 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 TRIOBPQ9H2D6 2365 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 PTPRZ1P23471 2315 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 TOM1O60784 492 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 PDIA4P13667 645 aaKnown RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 OSCARQ8IYS5 282 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 PI4KAP42356 2102 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 MDC1Q14676 2089 aaKnown RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 PPP1R12BO60237 982 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 REC8O95072 547 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 PLCD3Q8N3E9 789 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 SLC26A8Q96RN1 970 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 PPP1R9BQ96SB3 815 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 TOMM22Q9NS69 142 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 ASCC3Q8N3C0 2202 aaKnown RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 PIP4K2AP48426 406 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 PPP4R3BQ5MIZ7 849 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 OTUD7BQ6GQQ9 843 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 CENPHQ9H3R5 247 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 EHMT1Q9H9B1 1298 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 IFT57Q9NWB7 429 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 NUTM2BA6NNL0 878 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 NUTM2EB1AL46 878 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 CCDC175P0C221 793 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 LMOD1P29536 600 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 SEPT6Q14141 434 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 MLECQ14165 292 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 TTLL12Q14166 644 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 SEPT7Q16181 437 aaKnown RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 NUTM2DQ5VT03 806 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 NUTM2AQ8IVF1 878 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 CT47B1P0C2W7 299 aaPredicted RBP3.28□□□□□ -1.89
SCN1A-219ENST00000641575 ENOX2Q16206 610 aaKnown RBP3.28□□□□□ -1.89
SCN1A-219ENST00000641575 PAIP2Q9BPZ3 127 aaKnown RBP3.28□□□□□ -1.89
SCN1A-219ENST00000641575 MYH3P11055 1940 aa3.28□□□□□ -1.89
SCN1A-219ENST00000641575 ERICH4A6NGS2 130 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 GBP2P32456 591 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-219ENST00000641575 ANAPC15P60006 121 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 APBB1IPQ7Z5R6 666 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-219ENST00000641575 NOTCH3Q9UM47 2321 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 APBB1O00213 710 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 CCDC174Q6PII3 467 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 TEFQ10587 303 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 CDC37L1Q7L3B6 337 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 CEP63Q96MT8 703 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 MYH15Q9Y2K3 1946 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 ST18O60284 1047 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 OFD1O75665 1012 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 CA8P35219 290 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 MRPS9P82933 396 aaKnown RBP3.27□□□□□ -1.89
SCN1A-219ENST00000641575 RAPGEF4Q8WZA2 1011 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 SWAP70Q9UH65 585 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 G3BP2Q9UN86 482 aaKnown RBP3.27□□□□□ -1.89
SCN1A-219ENST00000641575 BECN2A8MW95 431 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 NASPP49321 788 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-219ENST00000641575 DZIP1LQ8IYY4 767 aaKnown RBP3.27□□□□□ -1.89
SCN1A-219ENST00000641575 ENGASEQ8NFI3 743 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 UBE2Q2Q8WVN8 375 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 FBXW7Q969H0 707 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 UTP14AQ9BVJ6 771 aaKnown RBP3.27□□□□□ -1.89
SCN1A-219ENST00000641575 KRT23Q9C075 422 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 SMC2O95347 1197 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 TXLNAP40222 546 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 USP37Q86T82 979 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 TICAM2Q86XR7 235 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 FRAT1Q92837 279 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-219ENST00000641575 CACYBPQ9HB71 228 aaKnown RBP3.27□□□□□ -1.89
SCN1A-219ENST00000641575 GOLGA6L10A0A0M3HER8 536 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 TTC3P53804 2025 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 ERLIN2O94905 339 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 TNNT1P13805 278 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 SAFBQ15424 915 aaKnown RBP eCLIP3.27□□□□□ -1.89
SCN1A-219ENST00000641575 SF3A1Q15459 793 aaKnown RBP3.27□□□□□ -1.89
SCN1A-219ENST00000641575 TAF12Q16514 161 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 FAM107BQ9H098 131 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 CFDP1Q9UEE9 299 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-219ENST00000641575 STK24Q9Y6E0 443 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 ESPL1Q14674 2120 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 AK2P54819 239 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 CEP135Q66GS9 1140 aa3.27□□□□□ -1.89
SCN1A-219ENST00000641575 FYB1O15117 783 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 LETM1O95202 739 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-219ENST00000641575 KIF6Q6ZMV9 814 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 LRRCC1Q9C099 1032 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 ROCK1Q13464 1354 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 GTF2A1P52655 376 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-219ENST00000641575 RNF20Q5VTR2 975 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 HOOK2Q96ED9 719 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 CALCOCO1Q9P1Z2 691 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 EIF3JO75822 258 aaKnown RBP3.26□□□□□ -1.89
SCN1A-219ENST00000641575 RABEP1Q15276 862 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 SLC5A4Q9NY91 659 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 CAVIN1Q6NZI2 390 aaKnown RBP3.26□□□□□ -1.89
SCN1A-219ENST00000641575 PPP2R3CQ969Q6 453 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 FERP16591 822 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 CEP57L1Q8IYX8 460 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 OGFOD1Q8N543 542 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 VTI1AQ96AJ9 217 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 BCL2L13Q9BXK5 485 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 CEP112Q8N8E3 955 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms